Sodium in PDB 8amy: High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus

The structure of High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus, PDB code: 8amy was solved by E.Mueller, C.M.Hackney, L.Ellgaard, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.62 / 1.67
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	52.86, 52.86, 137.43, 90, 90, 90
R / Rfree (%)	16.9 / 20

The structure of High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus (pdb code 8amy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus, PDB code: 8amy:

Sodium binding site 1 out of 1 in the High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na507 b:73.7 occ:1.00 O A:HOH637 2.2 38.3 1.0 O A:HOH644 2.2 34.5 1.0 O A:HOH643 2.3 59.1 1.0 OG1 A:THR52 3.1 32.0 1.0 HG1 A:THR52 3.2 38.4 1.0 HZ3 A:LYS55 3.2 35.2 1.0 HG23 A:THR52 3.3 33.2 1.0 HA A:THR52 3.5 26.5 1.0 HA A:ASN47 3.7 27.7 1.0 CB A:THR52 3.9 28.0 1.0 HD3 A:LYS55 3.9 34.3 1.0 CG2 A:THR52 4.0 27.7 1.0 CA A:THR52 4.1 22.1 1.0 NZ A:LYS55 4.1 29.4 1.0 HG21 A:THR35 4.2 29.8 1.0 HG21 A:THR52 4.2 33.2 1.0 OD1 A:ASN47 4.2 28.6 1.0 HZ1 A:LYS55 4.4 35.2 1.0 HB3 A:ASN47 4.5 23.3 1.0 HG23 A:THR35 4.5 29.8 1.0 CA A:ASN47 4.5 23.1 1.0 N A:THR52 4.6 23.1 1.0 HZ2 A:LYS55 4.6 35.2 1.0 HE2 A:LYS55 4.6 39.6 1.0 H A:THR52 4.7 27.7 1.0 O A:ASN47 4.7 24.4 1.0 OH A:TYR31 4.7 27.6 1.0 CD A:LYS55 4.8 28.6 1.0 HB A:THR52 4.8 33.5 1.0 CE A:LYS55 4.8 33.0 1.0 HG22 A:THR52 4.8 33.2 1.0 CG2 A:THR35 4.8 24.8 1.0 HB2 A:CYS51 4.8 36.3 1.0 CB A:ASN47 4.9 19.4 1.0 C A:ASN47 4.9 27.7 1.0 CG A:ASN47 4.9 23.5 1.0 O A:THR46 5.0 26.7 1.0 HE1 A:TYR31 5.0 26.9 1.0 O A:ARG48 5.0 26.1 1.0

E.Mueller, C.M.Hackney, L.Ellgaard, J.P.Morth. High-Resolution Crystal Structure of the MU8.1 Conotoxin From Conus Mucronatus To Be Published.