Sodium in PDB 8als: The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase

All present enzymatic activity of The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase:
2.5.1.18;

The structure of The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase, PDB code: 8als was solved by R.Pandian, H.H.Makumbe, Y.Sayed, I.A.Achilonu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.68 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.133, 77.086, 54.015, 90, 93.15, 90
R / Rfree (%)	21.5 / 24.5

The binding sites of Sodium atom in the The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase (pdb code 8als). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase, PDB code: 8als:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:19.9 occ:1.00 O A:HOH554 2.5 18.3 1.0 N A:ARG16 3.2 23.8 1.0 O A:HOH486 3.2 30.7 1.0 N A:ALA17 3.2 16.7 1.0 CA A:GLY15 3.5 25.9 1.0 CB A:ALA17 3.6 13.8 1.0 C A:GLY15 3.6 22.9 1.0 O A:ASN12 3.8 26.3 1.0 CB A:TYR10 3.9 16.8 1.0 N A:GLY15 4.0 27.1 1.0 CA A:ALA17 4.0 17.0 1.0 CB A:ASN12 4.1 29.1 1.0 CA A:ARG16 4.1 23.4 1.0 C A:ARG16 4.1 19.5 1.0 CG A:PRO54 4.2 16.2 1.0 CB A:PRO54 4.3 15.7 1.0 CD A:PRO54 4.4 15.7 1.0 N A:ASN12 4.4 26.5 1.0 CB A:ARG16 4.5 24.9 1.0 O A:GLY15 4.5 22.1 1.0 CD2 A:TYR10 4.5 22.7 1.0 CA A:ASN12 4.6 26.6 1.0 C A:ASN12 4.6 28.0 1.0 CG A:TYR10 4.6 20.1 1.0 O A:HOH530 4.7 23.3 1.0 N A:PHE11 4.8 21.3 1.0 CA A:TYR10 4.8 19.2 1.0

Sodium binding site 2 out of 2 in the The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:15.0 occ:1.00 O B:HOH514 2.6 18.0 1.0 O B:HOH412 2.7 24.3 1.0 N B:ALA17 3.0 15.1 1.0 N B:ARG16 3.2 17.8 1.0 O B:HOH434 3.2 25.0 1.0 CB B:ALA17 3.3 13.9 1.0 C B:GLY15 3.6 21.0 1.0 CA B:GLY15 3.7 23.4 1.0 CA B:ALA17 3.8 19.0 1.0 O B:ASN12 3.8 26.9 1.0 C B:ARG16 3.9 18.2 1.0 CB B:TYR10 3.9 17.2 1.0 CB B:ASN12 3.9 29.1 1.0 CA B:ARG16 4.0 21.8 1.0 N B:GLY15 4.1 24.7 1.0 CG B:PRO54 4.1 17.3 1.0 N B:ASN12 4.2 28.6 1.0 O B:GLY15 4.3 21.0 1.0 CD B:PRO54 4.3 15.6 1.0 CB B:PRO54 4.3 14.2 1.0 CB B:ARG16 4.4 22.9 1.0 CA B:ASN12 4.5 25.4 1.0 CD2 B:TYR10 4.5 23.1 1.0 C B:ASN12 4.6 26.3 1.0 N B:PHE11 4.6 21.4 1.0 CG B:TYR10 4.6 22.0 1.0 ND2 B:ASN12 4.9 33.6 1.0 CA B:TYR10 4.9 16.7 1.0 C B:ALA17 4.9 19.3 1.0 CG B:ASN12 5.0 39.8 1.0

H.H.Makumbe, R.Pandian, Y.Sayed, I.A.Achilonu. The Apo-Crystal Structure of A Variant Form of the 28-kDa Schistosoma Haematobium Glutathione Transferase To Be Published.