Sodium in PDB 8ad5: X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A

All present enzymatic activity of X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A:
7.2.1.1;

The structure of X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A, PDB code: 8ad5 was solved by G.Fritz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.65 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	72.88, 90.47, 94.5, 90, 90, 90
R / Rfree (%)	18.1 / 21.4

The binding sites of Sodium atom in the X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A (pdb code 8ad5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A, PDB code: 8ad5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1502 b:29.1 occ:1.00 O A:HOH1667 2.4 38.9 1.0 O A:ALA327 2.4 28.2 1.0 O A:PHE333 2.5 21.6 1.0 O A:HOH1733 2.5 35.1 1.0 O A:ASN330 2.6 27.4 1.0 O A:HOH1813 2.8 36.8 1.0 C A:ALA327 3.4 28.1 1.0 C A:PHE333 3.6 21.6 1.0 CA A:ALA327 3.6 23.1 1.0 C A:ASN330 3.7 30.4 1.0 CA A:ASP331 3.9 23.8 1.0 CB A:ALA327 3.9 23.0 1.0 C A:ASP331 4.1 24.9 1.0 CG1 A:VAL334 4.1 29.7 1.0 O A:ASP331 4.1 29.2 1.0 N A:PHE333 4.2 21.6 1.0 N A:ASP331 4.2 26.6 1.0 CA A:PHE333 4.5 20.4 1.0 N A:VAL334 4.6 19.3 1.0 N A:ALA328 4.6 26.9 1.0 O A:HOH1817 4.7 34.0 1.0 CA A:VAL334 4.7 20.6 1.0 N A:ASN332 4.8 22.0 1.0 CA A:ASN330 4.8 25.5 1.0 N A:ASN330 4.8 27.4 1.0

Sodium binding site 2 out of 2 in the X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1502 b:28.6 occ:1.00 O B:ALA327 2.4 25.2 1.0 O B:HOH1756 2.5 39.2 1.0 O B:PHE333 2.5 21.2 1.0 O B:HOH1811 2.6 33.2 1.0 O B:ASN330 2.7 26.1 1.0 O B:HOH1644 2.8 38.2 1.0 C B:ALA327 3.4 23.0 1.0 C B:PHE333 3.6 21.8 1.0 C B:ASN330 3.7 26.0 1.0 CA B:ALA327 3.7 18.3 1.0 CA B:ASP331 3.9 22.0 1.0 CB B:ALA327 3.9 20.5 1.0 C B:ASP331 4.1 24.8 1.0 O B:ASP331 4.2 26.9 1.0 N B:PHE333 4.2 20.1 1.0 N B:ASP331 4.2 22.7 1.0 CG1 B:VAL334 4.3 26.3 1.0 O B:HOH1822 4.4 32.8 1.0 CA B:PHE333 4.5 18.9 1.0 N B:ALA328 4.6 22.1 1.0 N B:VAL334 4.6 19.9 1.0 CA B:VAL334 4.8 20.3 1.0 N B:ASN332 4.8 19.3 1.0 N B:ASN330 4.8 20.3 1.0 CA B:ASN330 4.8 24.4 1.0 OD1 B:ASP331 4.8 34.0 0.6

G.Fritz, G.Fritz. N/A N/A.
ISSN: ESSN 1545-9985