Sodium in PDB 7z05: White Bream Virus N7-Methyltransferase

The structure of White Bream Virus N7-Methyltransferase, PDB code: 7z05 was solved by A.Shannon, P.Gauffre, B.Canard, F.Ferron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.13 / 2.33
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	105.216, 49.787, 53.926, 90, 97.72, 90
R / Rfree (%)	21.1 / 26.5

The binding sites of Sodium atom in the White Bream Virus N7-Methyltransferase (pdb code 7z05). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the White Bream Virus N7-Methyltransferase, PDB code: 7z05:

Sodium binding site 1 out of 1 in the White Bream Virus N7-Methyltransferase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of White Bream Virus N7-Methyltransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:30.0 occ:1.00 O A:HOH457 4.0 30.0 1.0 OD1 A:ASP48 4.3 55.8 1.0 NH2 A:ARG69 4.3 59.0 1.0 CG A:ASP48 4.7 56.5 1.0 OD2 A:ASP48 4.7 60.5 1.0 O A:LYS44 4.8 52.0 1.0 O A:ILE46 4.9 42.7 1.0

A.Shannon, B.Sama, P.Gauffre, T.Guez, F.Debart, J.J.Vasseur, E.Decroly, B.Canard, F.Ferron. A Second Type of N7-Guanine Rna Cap Methyltransferase in An Unusual Locus of A Large Rna Virus Genome. Nucleic Acids Res. V. 50 11186 2022.
ISSN: ESSN 1362-4962
PubMed: 36265859
DOI: 10.1093/NAR/GKAC876