Sodium in PDB 7y7y: Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom

The structure of Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom (pdb code 7y7y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom, PDB code: 7y7y:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Na705 b:22.5 occ:1.00 O1 A:ID7701 2.2 21.6 1.0 O A:ALA61 2.2 23.1 1.0 OD1 A:ASN66 2.2 19.7 1.0 OG A:SER295 2.6 19.7 1.0 O A:SER295 2.9 19.7 1.0 OD1 A:ASN327 3.0 21.7 1.0 C1 A:ID7701 3.2 21.6 1.0 CG A:ASN66 3.2 19.7 1.0 C A:ALA61 3.4 23.1 1.0 CB A:SER295 3.6 19.7 1.0 CA A:SER295 3.6 19.7 1.0 C A:SER295 3.6 19.7 1.0 ND2 A:ASN66 3.7 19.7 1.0 CG A:ASN327 3.9 21.7 1.0 N A:GLY63 3.9 20.4 1.0 C3 A:ID7701 3.9 21.6 1.0 CA A:ILE62 4.0 22.8 1.0 O2 A:ID7701 4.0 21.6 1.0 ND2 A:ASN327 4.0 21.7 1.0 C2 A:ID7701 4.1 21.6 1.0 N A:ASN66 4.1 19.7 1.0 N A:ILE62 4.1 22.8 1.0 C A:ILE62 4.4 22.8 1.0 CB A:ASN66 4.5 19.7 1.0 CA A:ALA61 4.5 23.1 1.0 CA A:GLY65 4.5 18.6 1.0 C A:GLY65 4.5 18.6 1.0 CA A:ASN66 4.7 19.7 1.0 N A:GLY65 4.8 18.6 1.0 CA A:GLY63 4.8 20.4 1.0 N A:TYR296 4.9 21.9 1.0

Sodium binding site 2 out of 2 in the Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryo-Em Structure of Human Gaba Transporter GAT1 Bound with Nipecotic Acid in Nacl Solution in An Inward-Occluded State at 2.4 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Na706 b:22.5 occ:1.00 O A:ILE62 2.2 22.8 1.0 O A:HOH811 2.3 25.6 1.0 OD2 A:ASP395 2.3 25.8 1.0 O A:GLY59 2.4 26.8 1.0 CG A:ASP395 2.8 25.8 1.0 OD1 A:ASP395 3.0 25.8 1.0 O A:LEU392 3.1 23.9 1.0 OG A:SER396 3.3 22.7 1.0 C A:ILE62 3.4 22.8 1.0 C A:GLY59 3.5 26.8 1.0 N A:SER396 3.8 22.7 1.0 O A:HOH842 4.0 27.2 1.0 CB A:SER396 4.0 22.7 1.0 CA A:GLY63 4.0 20.4 1.0 CB A:ASP395 4.1 25.8 1.0 C A:LEU392 4.1 23.9 1.0 N A:GLY63 4.2 20.4 1.0 CA A:GLY59 4.2 26.8 1.0 CA A:SER396 4.3 22.7 1.0 O A:TYR60 4.3 24.9 1.0 N A:TYR60 4.4 24.9 1.0 O A:VAL58 4.4 27.9 1.0 C A:TYR60 4.4 24.9 1.0 N A:ILE62 4.4 22.8 1.0 CA A:ILE62 4.4 22.8 1.0 CA A:LEU392 4.5 23.9 1.0 CA A:TYR60 4.5 24.9 1.0 C A:ASP395 4.6 25.8 1.0 CD1 A:LEU392 4.6 23.9 1.0 CA A:ASP395 4.8 25.8 1.0 CB A:ILE62 4.9 22.8 1.0 N A:ALA61 4.9 23.1 1.0 CG A:LEU392 4.9 23.9 1.0

A.Zhu, J.Huang, F.Kong, J.Tan, J.Lei, Y.Yuan, C.Yan. Structural Investigation of the Gaba Transporter GAT1 To Be Published.