Sodium in PDB 7xu8: Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution.

The structure of Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution., PDB code: 7xu8 was solved by A.Maurya, N.Ahmad, V.Viswanathan, P.K.Singh, S.Yamini, P.Sharma, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.15 / 2.15
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	89.896, 101.637, 163.394, 90, 90, 90
R / Rfree (%)	22 / 28.2

The binding sites of Sodium atom in the Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution. (pdb code 7xu8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution., PDB code: 7xu8:

Sodium binding site 1 out of 1 in the Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Complex of Camel Peptidoglycan Recognition Protein- Short (Pgrp-S) with Heptanoic Acid at 2.15 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:27.0 occ:1.00 O A:HOH335 1.8 61.0 1.0 O A:ALA171 2.2 96.5 1.0 O C:HOH337 2.4 45.4 1.0 O A:HOH435 2.6 61.6 1.0 C A:ALA171 3.1 92.1 1.0 N A:ALA171 3.2 100.1 1.0 CA A:ALA171 3.4 91.2 1.0 O A:HOH457 3.5 67.6 1.0 O C:HOH306 3.5 40.0 1.0 O C:HOH364 3.5 24.1 0.5 CB A:ALA171 3.6 89.2 1.0 O A:HOH410 3.6 54.1 1.0 OE1 C:GLU24 3.6 51.6 1.0 C A:ARG170 3.8 94.4 1.0 NZ C:LYS90 4.1 42.2 1.0 O C:HOH364 4.2 18.3 0.5 OXT A:ALA171 4.3 87.4 1.0 CD C:GLU24 4.3 48.1 1.0 CA A:ARG170 4.4 86.8 1.0 O A:ARG170 4.5 88.0 1.0 CB A:ARG170 4.5 89.5 1.0 CG C:GLU24 4.8 44.5 1.0 CG A:ARG170 4.9 86.6 1.0 NZ A:LYS144 5.0 53.3 1.0

A.Maurya, N.Ahmad, P.K.Singh, V.Viswanathan, P.Kaur, P.Sharma, S.Sharma, T.P.Singh. Ligand Recognition By Peptidoglycan Recognition Protein-S (Pgrp-S): Structure of the Complex of Camel Pgrp-S with Heptanoic Acid at 2.15 Angstrom Resolution. Int J Biochem Mol Biol V. 13 28 2022.
ISSN: ESSN 2152-4114
PubMed: 36188729