Sodium in PDB 7soo: Lam Domain of Human LARP1

The structure of Lam Domain of Human LARP1, PDB code: 7soo was solved by G.Kozlov, K.Gehring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.18 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.572, 46.776, 57.098, 90, 90, 90
R / Rfree (%)	20.5 / 22.4

The binding sites of Sodium atom in the Lam Domain of Human LARP1 (pdb code 7soo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lam Domain of Human LARP1, PDB code: 7soo:

Sodium binding site 1 out of 1 in the Lam Domain of Human LARP1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lam Domain of Human LARP1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na505 b:53.0 occ:1.00 O A:HOH623 3.1 36.9 1.0 OG A:SER366 3.5 33.9 1.0 CB A:SER366 3.6 36.6 1.0 O A:HOH626 3.8 40.3 1.0 CA A:LEU363 3.9 28.9 1.0 CD1 A:LEU363 3.9 36.9 1.0 O A:THR362 4.0 31.7 1.0 O A:HOH646 4.3 42.3 1.0 N A:LEU363 4.4 29.6 1.0 C A:THR362 4.5 31.8 1.0 CB A:LEU363 4.5 29.2 1.0 O A:LEU363 4.7 30.9 1.0 C A:LEU363 4.8 28.0 1.0 CG A:LEU363 4.9 34.8 1.0

G.Kozlov, S.Mattijssen, J.Jiang, S.Nyandwi, T.Sprules, J.R.Iben, S.L.Coon, S.Gaidamakov, A.M.Noronha, C.J.Wilds, R.J.Maraia, K.Gehring. Structural Basis of 3'-End Poly(A) Rna Recognition By LARP1. Nucleic Acids Res. V. 50 9534 2022.
ISSN: ESSN 1362-4962
PubMed: 35979957
DOI: 10.1093/NAR/GKAC696