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Sodium in PDB 7sno: Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase

Protein crystallography data

The structure of Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase, PDB code: 7sno was solved by T.Ulaganathan, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.66 / 2.10
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 154.72, 154.72, 45.97, 90, 90, 120
R / Rfree (%) 18.1 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase (pdb code 7sno). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase, PDB code: 7sno:

Sodium binding site 1 out of 1 in 7sno

Go back to Sodium Binding Sites List in 7sno
Sodium binding site 1 out of 1 in the Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na609

b:39.3
occ:1.00
OD1 A:ASP46 2.3 46.3 1.0
OD1 A:ASP47 2.3 39.3 1.0
O1S B:L6S4 2.4 35.0 1.0
OD2 A:ASP339 2.4 39.1 1.0
OE1 A:GLN340 2.4 37.0 1.0
OD1 A:ASP339 2.8 36.5 1.0
CG A:ASP339 2.9 38.4 1.0
CD A:GLN340 3.2 38.1 1.0
CG A:ASP47 3.2 46.4 1.0
CG A:ASP46 3.4 46.7 1.0
NE2 A:GLN340 3.5 36.9 1.0
N A:ASP47 3.6 39.7 1.0
S1 B:L6S4 3.7 39.9 1.0
CB A:SER89 3.7 36.8 1.0
OD2 A:ASP47 3.8 53.2 1.0
O2S B:L6S4 3.9 40.9 1.0
OD2 A:ASP46 4.1 48.7 1.0
CA A:ASP47 4.1 42.0 1.0
C A:ASP46 4.2 42.7 1.0
CB A:ASP47 4.2 43.0 1.0
CA A:SER89 4.2 36.4 1.0
CE A:LYS352 4.2 39.5 1.0
CA A:ASP46 4.3 40.4 1.0
OG A:SER89 4.3 38.1 1.0
CB A:ASP339 4.4 34.0 1.0
NZ A:LYS137 4.4 41.6 1.0
CB A:ASP46 4.4 43.4 1.0
NZ A:LYS352 4.5 44.8 1.0
CG A:GLN340 4.5 34.2 1.0
N A:SER89 4.5 35.0 1.0
O3S B:L6S4 4.6 40.6 1.0
O6 B:L6S4 4.8 41.0 1.0
NH2 A:ARG93 4.8 37.4 1.0
CD A:LYS352 5.0 39.2 1.0

Reference:

T.Ulaganathan, M.Cygler. Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase To Be Published.
Page generated: Wed Oct 9 09:00:44 2024

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