Sodium in PDB 7snj: Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase

The structure of Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase, PDB code: 7snj was solved by T.Ulaganathan, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.70 / 1.74
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	154.86, 154.86, 46.32, 90, 90, 120
R / Rfree (%)	18.8 / 21.8

The binding sites of Sodium atom in the Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase (pdb code 7snj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase, PDB code: 7snj:

Sodium binding site 1 out of 1 in the Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na609 b:40.5 occ:1.00 OD2 A:ASP333 2.2 41.1 1.0 OD1 A:ASP40 2.3 42.8 1.0 OE1 A:GLN334 2.3 40.3 1.0 OD1 A:ASP41 2.3 42.2 1.0 OG A:SER83 2.7 45.7 1.0 OD1 A:ASP333 2.7 38.2 1.0 CG A:ASP333 2.8 39.5 1.0 CD A:GLN334 3.1 43.0 1.0 CB A:SER83 3.4 41.7 1.0 CG A:ASP41 3.4 45.3 1.0 NE2 A:GLN334 3.5 38.3 1.0 CG A:ASP40 3.5 45.6 1.0 N A:ASP41 3.6 39.2 1.0 CA A:SER83 3.7 38.2 1.0 OD2 A:ASP41 4.1 45.2 1.0 N A:SER83 4.1 39.9 1.0 CB A:ASP333 4.2 39.0 1.0 OD2 A:ASP40 4.2 45.1 1.0 CA A:ASP41 4.3 42.7 1.0 O A:HOH701 4.3 58.8 1.0 C A:ASP40 4.3 41.9 1.0 CA A:ASP40 4.4 41.1 1.0 CE A:LYS346 4.4 41.3 1.0 CG A:GLN334 4.4 39.6 1.0 CB A:ASP41 4.4 42.5 1.0 NH2 A:ARG87 4.4 40.0 1.0 CD2 A:HIS214 4.4 46.7 1.0 O1 A:CIT608 4.5 50.4 1.0 NZ A:LYS346 4.5 43.4 1.0 CB A:ASP40 4.6 42.1 1.0 NE A:ARG87 4.7 39.0 1.0 N A:GLN334 4.9 37.1 1.0 C A:ILE82 4.9 39.2 1.0 O2 A:CIT608 4.9 55.2 1.0

T.Ulaganathan, M.Cygler. Structure of BACPLE_01702, A GH29 Family Glycoside Hydrolase To Be Published.