Sodium in PDB 7rad: Crystal Structure Analysis of ALDH1B1

All present enzymatic activity of Crystal Structure Analysis of ALDH1B1:
1.2.1.3;

The structure of Crystal Structure Analysis of ALDH1B1, PDB code: 7rad was solved by D.Fernandez, J.K.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.58 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.127, 101.127, 185.52, 90, 90, 120
R / Rfree (%)	19.7 / 26

The binding sites of Sodium atom in the Crystal Structure Analysis of ALDH1B1 (pdb code 7rad). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure Analysis of ALDH1B1, PDB code: 7rad:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:38.5 occ:1.00 O A:GLN196 2.5 53.0 1.0 OG1 A:THR39 2.6 55.1 1.0 OD1 A:ASP109 2.6 64.6 1.0 O A:ASP109 2.7 52.0 1.0 O A:VAL40 2.7 56.4 1.0 O A:HOH709 2.9 44.8 1.0 C A:VAL40 3.6 55.3 1.0 CG A:ASP109 3.7 59.0 1.0 C A:GLN196 3.7 52.8 1.0 C A:ASP109 3.7 52.1 1.0 N A:VAL40 3.7 52.4 1.0 CB A:THR39 4.0 54.6 1.0 CA A:ASP109 4.1 51.2 1.0 CA A:VAL40 4.3 54.8 1.0 C A:THR39 4.3 52.2 1.0 CB A:ASP109 4.5 54.3 1.0 CA A:THR39 4.5 54.4 1.0 CA A:GLN196 4.5 53.2 1.0 OD2 A:ASP109 4.5 63.3 1.0 N A:ASN41 4.6 52.4 1.0 CD A:PRO42 4.7 51.1 1.0 N A:THR197 4.7 53.2 1.0 CG2 A:THR197 4.8 51.3 1.0 CA A:THR197 4.8 53.2 1.0 CD1 A:ILE48 4.9 60.3 1.0 CG2 A:THR39 4.9 55.3 1.0 CB A:GLN196 4.9 54.3 1.0 N A:ASN110 4.9 50.2 1.0 O A:VAL345 5.0 47.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure Analysis of ALDH1B1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure Analysis of ALDH1B1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na603 b:46.9 occ:1.00 O B:GLN196 2.5 71.3 1.0 O B:ASP109 2.6 63.8 1.0 O B:HOH717 2.6 57.3 1.0 OD1 B:ASP109 2.6 68.5 1.0 OG1 B:THR39 2.6 62.1 1.0 O B:VAL40 2.7 78.4 1.0 C B:ASP109 3.7 62.2 1.0 C B:GLN196 3.7 68.2 1.0 CG B:ASP109 3.7 65.3 1.0 N B:VAL40 3.7 65.3 1.0 C B:VAL40 3.8 71.5 1.0 CB B:THR39 4.0 62.1 1.0 CA B:ASP109 4.2 65.4 1.0 CA B:VAL40 4.4 69.0 1.0 C B:THR39 4.4 63.9 1.0 CB B:ASP109 4.5 63.3 1.0 CA B:THR39 4.5 64.4 1.0 OD2 B:ASP109 4.6 72.6 1.0 CD B:PRO42 4.6 74.1 1.0 CA B:GLN196 4.6 62.9 1.0 N B:THR197 4.6 66.3 1.0 CA B:THR197 4.7 65.8 1.0 N B:ASN110 4.8 62.3 1.0 N B:ASN41 4.8 74.7 1.0 O B:VAL345 4.9 62.6 1.0 CG2 B:THR197 4.9 67.0 1.0 CG2 B:THR39 4.9 62.7 1.0 CB B:VAL40 5.0 71.5 1.0

D.Fernandez, D.Fernandez, J.K.Chen. N/A N/A.
ISSN: ESSN 1552-4469