Sodium in PDB 7q9l: Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol

The structure of Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol, PDB code: 7q9l was solved by D.J.Derbyshire, P.Hammarstrom, E.Von Castelmur, A.Begum, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.56 / 1.45
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	43.048, 64.749, 85.046, 90, 90, 90
R / Rfree (%)	13.3 / 16.3

The binding sites of Sodium atom in the Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol (pdb code 7q9l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol, PDB code: 7q9l:

Sodium binding site 1 out of 1 in the Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Transthyretin Complexed with (E)-4-(2-(Naphthalen-1-Yl)Vinyl)Benzene- 1,2-Diol within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:40.0 occ:1.00 O B:ASP99 2.1 36.0 1.0 O B:HOH383 2.1 41.1 1.0 O B:HOH352 2.3 43.6 1.0 O B:HOH361 2.3 49.3 1.0 O B:HOH311 2.4 46.6 1.0 C B:ASP99 3.3 30.8 1.0 O B:HOH384 3.6 45.2 1.0 CA B:ASP99 4.1 29.3 1.0 OE2 B:GLU66 4.2 40.7 1.0 N B:SER100 4.3 31.7 1.0 CB B:ASP99 4.3 35.7 1.0 CA B:SER100 4.5 37.4 1.0 CD B:GLU66 4.6 35.4 1.0 OE1 B:GLU66 4.7 31.5 1.0

D.J.Derbyshire, P.Hammarstrom, E.Von Castelmur, A.Begum. Transthyretin Binding Mode Ambivalence of Fluorescent Trans-Stilbene Probes To Be Published.