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Sodium in PDB 7q7b: Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release

Enzymatic activity of Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release

All present enzymatic activity of Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release:
4.6.1.18;

Protein crystallography data

The structure of Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release, PDB code: 7q7b was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.00 / 1.78
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.67, 64.67, 65.22, 90, 90, 120
R / Rfree (%) 14.9 / 18.4

Other elements in 7q7b:

The structure of Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release (pdb code 7q7b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release, PDB code: 7q7b:

Sodium binding site 1 out of 1 in 7q7b

Go back to Sodium Binding Sites List in 7q7b
Sodium binding site 1 out of 1 in the Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Structure of Rnase A at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:46.2
occ:1.00
H A:ALA5 2.3 27.6 1.0
O3 A:SO4202 2.4 117.1 1.0
O A:HOH353 2.8 38.9 1.0
HB A:THR3 2.9 33.7 1.0
HB2 A:ALA5 3.0 31.4 1.0
N A:ALA5 3.1 23.1 1.0
HB3 A:ALA5 3.1 31.4 1.0
HB3 A:ALA4 3.3 39.7 1.0
H A:ALA4 3.3 32.0 1.0
CB A:ALA5 3.4 26.2 1.0
N A:ALA4 3.6 26.7 1.0
S A:SO4202 3.7 113.9 1.0
CB A:THR3 3.8 28.1 1.0
CA A:ALA5 3.8 20.9 1.0
O2 A:SO4202 3.9 115.8 1.0
C A:ALA4 4.0 27.4 1.0
OG1 A:THR3 4.0 28.4 1.0
CB A:ALA4 4.1 33.2 1.0
CA A:ALA4 4.1 27.7 1.0
O A:HOH332 4.1 46.6 1.0
HB1 A:ALA5 4.3 31.4 1.0
C A:THR3 4.3 30.2 1.0
HA A:ALA5 4.3 25.0 1.0
HG12 A:VAL118 4.4 32.9 1.0
O4 A:SO4202 4.4 122.2 1.0
HG11 A:VAL118 4.4 32.9 1.0
HB2 A:ALA4 4.5 39.7 1.0
H A:ALA6 4.5 28.3 1.0
CA A:THR3 4.6 27.0 1.0
O A:HOH367 4.6 49.2 1.0
O A:HOH344 4.6 25.7 1.0
HA A:THR3 4.7 32.3 1.0
HG21 A:THR3 4.7 37.5 1.0
O1 A:SO4202 4.7 113.5 1.0
HB1 A:ALA4 4.7 39.7 1.0
CG2 A:THR3 4.8 31.3 1.0
CG1 A:VAL118 4.9 27.4 1.0
HG1 A:THR3 4.9 34.0 1.0
HG21 A:VAL116 4.9 35.7 1.0
HG22 A:THR3 5.0 37.5 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Wed Oct 9 08:19:57 2024

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