Atomistry » Sodium » PDB 7q1n-7qta » 7q7a
Atomistry »
  Sodium »
    PDB 7q1n-7qta »
      7q7a »

Sodium in PDB 7q7a: Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary

Enzymatic activity of Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary

All present enzymatic activity of Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary:
4.6.1.18;

Protein crystallography data

The structure of Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7a was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.97 / 1.56
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.28, 64.28, 64.69, 90, 90, 120
R / Rfree (%) 15.5 / 19

Other elements in 7q7a:

The structure of Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q7a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7a:

Sodium binding site 1 out of 1 in 7q7a

Go back to Sodium Binding Sites List in 7q7a
Sodium binding site 1 out of 1 in the Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Structure of Rnase A at 120 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:37.7
occ:1.00
H A:ALA5 2.2 23.7 1.0
O3 A:SO4202 2.4 92.3 1.0
O A:HOH358 2.9 34.5 1.0
HB A:THR3 2.9 25.1 1.0
HB2 A:ALA5 3.1 23.3 1.0
N A:ALA5 3.1 19.8 1.0
HB3 A:ALA4 3.1 30.2 1.0
H A:ALA4 3.1 24.4 1.0
HB3 A:ALA5 3.2 23.3 1.0
CB A:ALA5 3.5 19.4 1.0
N A:ALA4 3.5 20.4 1.0
S A:SO4202 3.5 89.3 1.0
O2 A:SO4202 3.6 84.9 1.0
HG1 A:THR3 3.8 25.5 1.0
CB A:THR3 3.8 20.9 1.0
CA A:ALA5 3.9 16.4 1.0
CB A:ALA4 3.9 25.2 1.0
C A:ALA4 4.0 18.7 1.0
CA A:ALA4 4.0 20.1 1.0
OG1 A:THR3 4.0 21.3 1.0
HG12 A:VAL118 4.2 26.2 1.0
O A:HOH323 4.2 33.7 1.0
C A:THR3 4.3 21.8 1.0
O4 A:SO4202 4.3 96.0 1.0
HB2 A:ALA4 4.4 30.2 1.0
HB1 A:ALA5 4.4 23.3 1.0
HA A:ALA5 4.4 19.7 1.0
HG11 A:VAL118 4.5 26.2 1.0
H A:ALA6 4.5 22.2 1.0
CA A:THR3 4.5 20.1 1.0
HB1 A:ALA4 4.6 30.2 1.0
O1 A:SO4202 4.6 87.4 1.0
HA A:THR3 4.6 24.1 1.0
O A:HOH365 4.7 21.1 1.0
CG2 A:THR3 4.8 25.3 1.0
O A:HOH396 4.8 38.0 1.0
CG1 A:VAL118 4.8 21.9 1.0
HG22 A:THR3 4.8 30.4 1.0
HG21 A:THR3 4.8 30.4 1.0
HA A:ALA4 5.0 24.1 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Fri Apr 7 15:44:21 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy