Sodium in PDB 7ncd: Glutathione-S-Transferase Glig Mutant N27D

Protein crystallography data

The structure of Glutathione-S-Transferase Glig Mutant N27D, PDB code: 7ncd was solved by M.Groll, E.M.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.03, 85.03, 345.01, 90, 90, 90
R / Rfree (%) 21 / 23.9

Other elements in 7ncd:

The structure of Glutathione-S-Transferase Glig Mutant N27D also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Glutathione-S-Transferase Glig Mutant N27D (pdb code 7ncd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Glutathione-S-Transferase Glig Mutant N27D, PDB code: 7ncd:

Sodium binding site 1 out of 1 in 7ncd

Go back to Sodium Binding Sites List in 7ncd
Sodium binding site 1 out of 1 in the Glutathione-S-Transferase Glig Mutant N27D


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glutathione-S-Transferase Glig Mutant N27D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:55.9
occ:1.00
OE2 A:GLU207 2.5 54.5 1.0
O A:HOH424 3.2 40.7 1.0
CD A:GLU207 3.7 52.8 1.0
CB A:GLU207 3.8 48.3 1.0
CD A:LYS204 4.0 54.1 1.0
NH1 A:ARG211 4.1 52.4 1.0
NZ A:LYS204 4.2 58.6 1.0
CG A:GLU207 4.3 50.4 1.0
NH2 A:ARG211 4.3 48.6 1.0
CE A:LYS204 4.6 56.4 1.0
CZ A:ARG211 4.7 50.6 1.0
OE1 A:GLU207 4.7 55.2 1.0

Reference:

K.Scherlach, W.Kuttenlochner, D.H.Scharf, A.A.Brakhage, C.Hertweck, M.Groll, E.Huber. Structural and Mechanistic Insights Into C-S Bond Formation in Gliotoxin. Angew.Chem.Int.Ed.Engl. 2021.
ISSN: ESSN 1521-3773
PubMed: 33909314
DOI: 10.1002/ANIE.202104372
Page generated: Mon Jul 12 16:03:20 2021

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