Sodium in PDB 7m14: X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni

Enzymatic activity of X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni

All present enzymatic activity of X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni:
5.1.3.13;

Protein crystallography data

The structure of X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni, PDB code: 7m14 was solved by N.M.Girardi, J.B.Thoden, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.83 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 134.286, 83.709, 110.044, 90, 94.74, 90
R / Rfree (%) 20.2 / 26.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni (pdb code 7m14). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni, PDB code: 7m14:

Sodium binding site 1 out of 1 in 7m14

Go back to Sodium Binding Sites List in 7m14
Sodium binding site 1 out of 1 in the X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:45.5
occ:1.00
 O B:HOH395 2.3 30.5 1.0
O B:HOH350 2.4 43.2 1.0
O B:TRP162 2.5 24.3 1.0
OD2 B:ASP161 2.7 35.5 1.0
O B:HOH330 2.8 29.9 1.0
C B:TRP162 3.6 25.2 1.0
N B:TRP162 3.7 26.0 1.0
CG B:ASP161 3.9 35.1 1.0
C B:ASP161 4.3 28.1 1.0
CA B:TRP162 4.3 24.9 1.0
CA B:ASP161 4.3 29.3 1.0
N B:PRO163 4.6 26.1 1.0
CB B:ASP161 4.7 32.6 1.0
O B:HOH369 4.7 38.5 1.0
CA B:PRO163 4.7 27.8 1.0
OD1 B:ASP161 4.8 41.6 1.0

Reference:

J.P.Huddleston, T.K.Anderson, N.M.Girardi, J.B.Thoden, Z.Taylor, H.M.Holden, F.M.Raushel. Biosynthesis of D-Glycose-L-Gluco-Heptose in the Capsular Polysaccharides of Campylobacter Jejuni To Be Published.
Page generated: Sat Apr 3 17:56:55 2021

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