Sodium in PDB 7ld8: Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV

Enzymatic activity of Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV

All present enzymatic activity of Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV:
1.11.1.18;

Protein crystallography data

The structure of Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV, PDB code: 7ld8 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.37 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 48.55, 113.5, 43.37, 90, 90, 90
R / Rfree (%) 13.4 / 17.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV (pdb code 7ld8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV, PDB code: 7ld8:

Sodium binding site 1 out of 1 in 7ld8

Go back to Sodium Binding Sites List in 7ld8
Sodium binding site 1 out of 1 in the Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:18.2
occ:1.00
 O A:ALA224 2.3 13.8 1.0
O A:HOH591 2.4 26.2 1.0
O A:LEU227 2.4 16.7 1.0
O A:GLY230 2.4 17.6 1.0
O A:HOH480 2.5 24.8 1.0
O A:HOH653 2.5 30.4 1.0
C A:ALA224 3.4 11.9 1.0
C A:GLY230 3.5 13.7 1.0
C A:LEU227 3.7 14.8 1.0
N A:GLY230 3.7 15.1 1.0
CA A:GLY230 3.9 14.2 1.0
CA A:ASP225 4.0 15.5 1.0
O A:ASP225 4.1 17.1 1.0
C A:ASP225 4.2 14.1 1.0
N A:ASP225 4.2 13.3 1.0
C A:PRO228 4.4 17.0 1.0
O A:PRO228 4.4 20.0 1.0
N A:LEU227 4.4 13.6 1.0
CA A:LEU227 4.4 12.9 1.0
CA A:ALA224 4.5 11.3 1.0
CB A:LEU227 4.6 12.4 1.0
N A:PRO228 4.6 14.9 1.0
N A:ARG231 4.6 11.5 1.0
CA A:PRO228 4.6 16.9 1.0
O A:HOH710 4.7 31.7 1.0
N A:ASN229 4.8 15.1 1.0
C A:ASN229 4.8 14.8 1.0
CB A:ALA224 4.9 12.1 1.0
CA A:ARG231 5.0 12.1 0.4
N A:ALA226 5.0 12.8 1.0

Reference:

N.D.Debouver, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Acetyl-Coenzyme A Synthetase Synthetase From Coccidioides Immitis in Complex with Prx To Be Published.
Page generated: Mon Jan 25 15:54:16 2021

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