Sodium in PDB 7l2w: Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A

The binding sites of Sodium atom in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A (pdb code 7l2w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A, PDB code: 7l2w:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na902 b:58.0 occ:1.00 O B:GLY643 3.5 59.6 1.0 O D:GLY643 3.5 59.5 1.0 O C:GLY643 3.5 58.7 1.0 O A:GLY643 3.6 59.7 1.0 C B:GLY643 4.7 59.6 1.0 C D:GLY643 4.7 59.5 1.0 C C:GLY643 4.8 58.7 1.0 C A:GLY643 4.8 59.7 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012