Sodium in PDB, part 246 (files: 9801-9840),
PDB 7l2u-7lpl
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9801-9840 (PDB 7l2u-7lpl).
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7l2u (Na: 2) - Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Open State
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7l2v (Na: 1) - Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B
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7l2w (Na: 1) - Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State A
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7l35 (Na: 1) - Human Dna Ligase 1 - R771W Nicked Dna Complex
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7l3m (Na: 1) - Pepck Mmqx Structure 40MS Post-Mixing with Oxaloacetic Acid
Other atoms:
Mn (3);
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7l4l (Na: 2) - Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, Fabf, and C8-Crypto Acyl Carrier Protein, Acpp
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7l5m (Na: 1) - Crystal Structure of the Dib-Rm-Split Protein
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7l6c (Na: 4) - Crystal Structure of Enoyl-[Acyl-Carrier-Protein] Reductase Inha From Mycobacterium Abscessus in Complex with Nad
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7l6j (Na: 7) - Crystal Structure of the Putative Hydrolase From Stenotrophomonas Maltophilia
Other atoms:
Cl (2);
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7l8o (Na: 4) - Oxa-48 Bound By Compound 4.3
Other atoms:
Cl (5);
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7la9 (Na: 1) - Crystal Structure of the First Bromodomain (BD1) of Human BRD4 (BRD4- 1) in Complex with Bivalent Inhibitor Nc-III-49-1
Other atoms:
Cl (8);
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7lcz (Na: 5) - Crystal Structure of the Arm Domain From Drosophila SARM1 in Complex with Nmn
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7ld8 (Na: 1) - Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV
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7ld9 (Na: 1) - Structure of Human GGT1 in Complex with Abba
Other atoms:
Cl (2);
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7lfi (Na: 2) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide Refined at 1.70 Angstroms Resolution
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7lfj (Na: 1) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Ala Mutant, Refined at 1.70 Angstroms Resolution
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7lfk (Na: 6) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Thr Mutant, Refined at 1.60 Angstroms Resolution
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7lfm (Na: 1) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Val Mutant, Triclinic Cell, Refined at 1.60 Angstroms Resolution
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7lfy (Na: 3) - Cryo-Em Structure of Human Cgmp-Bound Open CNGA1 Channel in Na+
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7lgd (Na: 1) - Hla-B*07:02 in Complex with Sars-Cov-2 Nucleocapsid Peptide N105-113
Other atoms:
Cl (5);
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7lgp (Na: 3) - Dape Enzyme From Shigella Flexneri
Other atoms:
Cl (15);
Zn (2);
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7lgt (Na: 4) - Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83
Other atoms:
K (12);
Cl (9);
Zn (11);
Br (1);
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7lh8 (Na: 1) - Crystal Structure of the First Bromodomain of Human BRD4 in Complex with Inhibitor Jj-II-131
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7lhx (Na: 1) - Human U1A Protein with F37M and F77M Mutations For Improved Phasing
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7li0 (Na: 4) - Crystal Structure of Apo Moraxella Catarrhalis Ferric Binding Protein A in An Open Conformation
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7lia (Na: 2) - 5-Ht Bound Serotonin Transporter Reconstituted in Lipid Nanodisc in Presence of Nacl in Outward Facing Conformation
Other atoms:
Cl (1);
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7lj2 (Na: 2) - Structure of Exo-L-Galactose-6-Sulfatase BUS1_11 From Bacteroides Uniformis in Complex with Neoporphyrabiose
Other atoms:
Ca (2);
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7lk8 (Na: 3) - Crystal Structure of Kpc-2 T215P Mutant
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7llp (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Crystal Structure, Dataset 1
Other atoms:
Cl (1);
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7lm5 (Na: 1) - Crystal Structure of the Zn(II)-Bound Adcaii H65A Mutant Variant of Streptococcus Pneumoniae
Other atoms:
Zn (11);
Cl (2);
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7ln8 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Crystal Structure, Dataset 3
Other atoms:
Cl (1);
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7ln9 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 1
Other atoms:
Cl (2);
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7lnp (Na: 10) - Structure of the Exo-Alpha-L-Galactosidase BPGH29 (D264N Mutant) From Bacteroides Plebeius in Complex with Paranitrophenyl-Alpha-L- Galactopyranoside
Other atoms:
Cl (2);
Ni (9);
Ca (4);
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7loq (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 2
Other atoms:
Cl (2);
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7lor (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 3
Other atoms:
Cl (2);
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7lp6 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 2 (Merged)
Other atoms:
Cl (2);
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7lp9 (Na: 2) - Cryo-Em Structure of Full-Length TRPV1 at 4 Degrees Celsius
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7lpa (Na: 2) - Cryo-Em Structure of Full-Length TRPV1 with Capsaicin at 4 Degrees Celsius
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7lpf (Na: 1) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with Inhibitor N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site and Sodium Ion at the Metal Coordination Site at 1.10 Angstrom Resolution
Other atoms:
F (3);
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7lpl (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 3 (Merged)
Other atoms:
Cl (2);
Page generated: Fri Jul 28 12:34:42 2023
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