Sodium in PDB 7l2v: Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B

The binding sites of Sodium atom in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B (pdb code 7l2v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B, PDB code: 7l2v:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Rtx-Bound Minimal TRPV1 with Nmdg at State B within 5.0Å range: probe atom residue distance (Å) B Occ B:Na903 b:74.2 occ:1.00 O C:GLY643 3.8 98.3 1.0 O3 B:XPS902 3.8 124.4 1.0 O D:GLY643 4.1 97.3 1.0 O A:GLY643 4.1 98.8 1.0 O B:GLY643 4.2 97.0 1.0 O B:XPS902 4.5 124.4 1.0 OH B:TYR671 4.9 91.6 1.0 C C:GLY643 5.0 98.3 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012