Sodium in PDB 7l2t: Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Partial Open State

The binding sites of Sodium atom in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Partial Open State (pdb code 7l2t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Partial Open State, PDB code: 7l2t:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Partial Open State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Dktx-Bound Minimal TRPV1 in Partial Open State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:33.3 occ:1.00 O A:GLY643 2.9 21.6 1.0 O C:GLY643 2.9 22.4 1.0 O D:GLY643 3.1 23.0 1.0 O B:GLY643 3.2 21.7 1.0 C A:GLY643 3.9 21.6 1.0 C C:GLY643 3.9 22.4 1.0 C D:GLY643 4.2 23.0 1.0 CA A:GLY643 4.2 21.6 1.0 C B:GLY643 4.3 21.7 1.0 CA C:GLY643 4.3 22.4 1.0 CA D:GLY643 4.6 23.0 1.0 CA B:GLY643 4.7 21.7 1.0 O C:HOH1001 4.9 18.5 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012