Sodium in PDB 7kyl: Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80

The structure of Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80, PDB code: 7kyl was solved by J.M.Errico, C.A.Nelson, D.H.Fremont, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.67 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	79.154, 62.557, 141.546, 90, 97.97, 90
R / Rfree (%)	19 / 22.4

The structure of Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80 (pdb code 7kyl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80, PDB code: 7kyl:

Sodium binding site 1 out of 1 in the Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Powassan Virus Envelope Protein Diii in Complex with Neutralizing Fab Powv-80 within 5.0Å range: probe atom residue distance (Å) B Occ H:Na301 b:40.8 occ:1.00 O H:SER174 2.4 34.0 1.0 O H:HOH432 2.6 50.2 1.0 O H:HOH577 2.9 29.0 1.0 O H:THR195 3.1 23.5 1.0 C H:SER174 3.5 28.2 1.0 OG H:SER174 3.8 40.8 1.0 CG1 H:VAL196 3.8 28.4 1.0 CA H:GLY175 4.0 25.8 1.0 C H:THR195 4.1 24.3 1.0 CG2 H:VAL194 4.1 22.4 1.0 N H:GLY175 4.2 26.2 1.0 O H:HOH439 4.5 45.8 1.0 CA H:SER174 4.6 36.9 1.0 C H:GLY175 4.6 22.9 1.0 CA H:VAL196 4.7 27.7 1.0 CD2 H:LEU172 4.7 34.6 1.0 CG H:LEU172 4.7 40.3 1.0 N H:SER174 4.8 38.9 1.0 CB H:SER174 4.8 39.0 1.0 N H:VAL196 4.8 22.1 1.0 N H:THR195 4.8 21.1 1.0 CB H:VAL196 4.8 23.0 1.0 O H:GLY175 4.9 24.1 1.0

L.A.Vanblargan, J.M.Errico, N.M.Kafai, K.E.Burgomaster, P.N.Jethva, R.M.Broeckel, K.Meade-White, C.A.Nelson, S.Himansu, D.Wang, S.A.Handley, M.L.Gross, S.M.Best, T.C.Pierson, D.H.Fremont, M.S.Diamond. Broadly Neutralizing Monoclonal Antibodies Protect Against Multiple Tick-Borne Flaviviruses To Be Published.