Sodium in PDB 7kou: 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Protein crystallography data
The structure of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58, PDB code: 7kou
was solved by
G.Minasov,
L.Shuvalova,
I.Dubrovska,
S.Pshenychnyi,
M.Endres,
K.J.F.Satchell,
Center For Structural Genomics Of Infectious Diseases(Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.80 /
1.83
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
120.928,
62.022,
101.916,
90,
90,
90
|
R / Rfree (%)
|
16.2 /
19.3
|
Other elements in 7kou:
The structure of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
(pdb code 7kou). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 10 binding sites of Sodium where determined in the
1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58, PDB code: 7kou:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 1 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na202
b:29.6
occ:1.00
|
O
|
A:HOH414
|
2.2
|
27.1
|
1.0
|
OXT
|
D:GLU168
|
2.4
|
27.0
|
1.0
|
O
|
A:GLY38
|
2.4
|
16.4
|
1.0
|
O
|
A:GLY47
|
2.5
|
25.5
|
1.0
|
O
|
D:HOH318
|
2.5
|
26.5
|
1.0
|
C
|
A:GLY47
|
3.4
|
25.5
|
1.0
|
C
|
D:GLU168
|
3.4
|
26.4
|
1.0
|
N
|
A:GLY38
|
3.5
|
17.1
|
1.0
|
CA
|
A:GLY47
|
3.5
|
27.6
|
1.0
|
C
|
A:GLY38
|
3.6
|
17.6
|
1.0
|
O
|
D:GLU168
|
3.8
|
29.1
|
1.0
|
ND2
|
D:ASN39
|
4.0
|
24.9
|
1.0
|
CA
|
A:GLY38
|
4.0
|
17.1
|
1.0
|
CG1
|
A:ILE40
|
4.2
|
18.3
|
1.0
|
CB
|
D:ASN39
|
4.3
|
20.9
|
1.0
|
C
|
A:SER37
|
4.3
|
16.7
|
1.0
|
O
|
D:HOH411
|
4.4
|
49.0
|
1.0
|
CA
|
A:SER37
|
4.5
|
16.5
|
1.0
|
CG
|
D:ASN39
|
4.5
|
23.1
|
1.0
|
O
|
A:HOH466
|
4.6
|
32.0
|
0.5
|
N
|
A:ILE40
|
4.6
|
17.6
|
1.0
|
O
|
A:ILE40
|
4.6
|
19.7
|
1.0
|
N
|
A:ALA48
|
4.7
|
23.5
|
1.0
|
CA
|
D:GLU168
|
4.7
|
22.7
|
1.0
|
N
|
A:ASN39
|
4.7
|
17.2
|
1.0
|
CB
|
A:SER37
|
4.8
|
17.3
|
1.0
|
CD1
|
A:ILE40
|
5.0
|
18.4
|
1.0
|
O
|
D:HOH439
|
5.0
|
51.7
|
1.0
|
|
Sodium binding site 2 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 2 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na203
b:47.4
occ:1.00
|
O
|
A:HOH434
|
2.3
|
33.8
|
1.0
|
O
|
A:HOH403
|
2.3
|
40.9
|
1.0
|
OG
|
A:SER106
|
2.4
|
22.1
|
1.0
|
O
|
A:SER156
|
2.4
|
21.0
|
0.5
|
O
|
A:HOH365
|
2.5
|
43.1
|
1.0
|
O
|
A:SER156
|
2.5
|
22.2
|
0.5
|
O
|
A:SER158
|
2.5
|
19.7
|
0.5
|
C
|
A:SER156
|
3.4
|
20.5
|
0.5
|
C
|
A:SER156
|
3.4
|
21.8
|
0.5
|
CB
|
A:SER106
|
3.5
|
19.9
|
1.0
|
C
|
A:SER158
|
3.8
|
19.5
|
0.5
|
O
|
A:HOH448
|
3.9
|
29.4
|
0.5
|
CA
|
A:SER156
|
4.0
|
22.8
|
0.5
|
CA
|
A:SER156
|
4.0
|
20.4
|
0.5
|
CA
|
A:ALA159
|
4.1
|
18.9
|
0.5
|
N
|
A:ALA159
|
4.2
|
18.6
|
0.5
|
C
|
A:SER158
|
4.2
|
18.4
|
0.5
|
CA
|
A:ALA159
|
4.3
|
19.1
|
0.5
|
O
|
A:TYR155
|
4.3
|
21.6
|
1.0
|
O
|
A:SER158
|
4.3
|
17.7
|
0.5
|
N
|
A:SER158
|
4.3
|
19.1
|
0.5
|
CA
|
A:SER106
|
4.4
|
19.3
|
1.0
|
N
|
A:ARG157
|
4.5
|
20.9
|
1.0
|
O
|
A:HOH398
|
4.5
|
28.6
|
1.0
|
O
|
A:HOH448
|
4.5
|
21.6
|
0.5
|
O
|
A:HOH410
|
4.5
|
26.4
|
1.0
|
N
|
A:SER158
|
4.5
|
19.8
|
0.5
|
N
|
A:ALA159
|
4.5
|
18.9
|
0.5
|
CB
|
A:ALA159
|
4.5
|
18.4
|
0.5
|
C
|
A:ARG157
|
4.6
|
20.0
|
1.0
|
CB
|
A:ALA159
|
4.7
|
18.4
|
0.5
|
CA
|
A:SER158
|
4.8
|
19.4
|
0.5
|
CA
|
A:ARG157
|
4.8
|
20.0
|
1.0
|
CB
|
A:SER156
|
4.8
|
24.9
|
0.5
|
O
|
A:HOH396
|
4.8
|
31.2
|
1.0
|
CZ3
|
A:TRP160
|
4.9
|
43.1
|
1.0
|
CA
|
A:SER158
|
4.9
|
18.6
|
0.5
|
CB
|
A:SER156
|
4.9
|
20.8
|
0.5
|
O
|
A:VAL105
|
4.9
|
20.1
|
1.0
|
|
Sodium binding site 3 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 3 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na204
b:23.6
occ:1.00
|
O
|
A:HOH395
|
2.3
|
31.6
|
1.0
|
OE1
|
A:GLU133
|
2.4
|
24.1
|
1.0
|
O
|
A:TYR128
|
2.4
|
20.8
|
1.0
|
OE2
|
A:GLU133
|
2.4
|
28.5
|
1.0
|
CD
|
A:GLU133
|
2.7
|
26.9
|
1.0
|
C
|
A:TYR128
|
3.5
|
20.1
|
1.0
|
CB
|
A:ASN127
|
3.7
|
23.8
|
1.0
|
CA
|
A:MET129
|
3.9
|
21.5
|
1.0
|
N
|
A:MET129
|
4.1
|
20.5
|
1.0
|
O
|
A:ASN127
|
4.2
|
20.0
|
1.0
|
CG
|
A:GLU133
|
4.2
|
27.4
|
1.0
|
C
|
A:ASN127
|
4.2
|
21.1
|
1.0
|
O
|
A:HOH444
|
4.4
|
45.2
|
1.0
|
O
|
A:HOH310
|
4.5
|
51.8
|
1.0
|
N
|
A:TYR128
|
4.5
|
20.9
|
1.0
|
N
|
A:THR130
|
4.5
|
21.5
|
1.0
|
CA
|
A:ASN127
|
4.6
|
22.9
|
1.0
|
CG
|
A:MET129
|
4.7
|
23.4
|
1.0
|
CA
|
A:TYR128
|
4.7
|
20.1
|
1.0
|
C
|
A:MET129
|
4.8
|
21.9
|
1.0
|
CG
|
A:ASN127
|
4.8
|
26.4
|
1.0
|
CB
|
A:GLU133
|
4.8
|
26.6
|
1.0
|
CB
|
A:MET129
|
4.8
|
22.5
|
1.0
|
O
|
A:LEU124
|
4.9
|
20.6
|
1.0
|
ND2
|
A:ASN127
|
4.9
|
26.4
|
1.0
|
|
Sodium binding site 4 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 4 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na202
b:20.4
occ:0.50
|
O
|
B:HOH411
|
1.7
|
21.1
|
0.5
|
O
|
C:HOH305
|
2.2
|
30.4
|
1.0
|
O
|
B:GLY38
|
2.4
|
18.6
|
1.0
|
O
|
C:HOH301
|
2.4
|
33.2
|
1.0
|
O
|
B:GLY47
|
2.5
|
29.2
|
1.0
|
O
|
C:GLU168
|
3.4
|
40.1
|
1.0
|
C
|
B:GLY47
|
3.5
|
28.0
|
1.0
|
C
|
B:GLY38
|
3.5
|
18.0
|
1.0
|
N
|
B:GLY38
|
3.5
|
17.1
|
1.0
|
CA
|
B:GLY47
|
3.6
|
30.7
|
1.0
|
CA
|
B:GLY38
|
3.9
|
17.8
|
1.0
|
ND2
|
C:ASN39
|
4.0
|
27.2
|
1.0
|
CG1
|
B:ILE40
|
4.2
|
19.2
|
1.0
|
O
|
B:HOH421
|
4.3
|
27.1
|
0.5
|
C
|
C:GLU168
|
4.3
|
36.7
|
1.0
|
C
|
B:SER37
|
4.4
|
17.0
|
1.0
|
CB
|
C:ASN39
|
4.4
|
24.2
|
1.0
|
CG
|
C:ASN39
|
4.6
|
26.3
|
1.0
|
N
|
B:ILE40
|
4.6
|
17.7
|
1.0
|
N
|
B:ASN39
|
4.6
|
18.1
|
1.0
|
CA
|
B:SER37
|
4.7
|
16.7
|
1.0
|
N
|
B:ALA48
|
4.7
|
23.6
|
1.0
|
CD1
|
B:ILE40
|
4.8
|
20.0
|
1.0
|
O
|
B:HOH356
|
4.8
|
47.3
|
1.0
|
CA
|
C:GLU168
|
4.9
|
28.7
|
1.0
|
|
Sodium binding site 5 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 5 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na203
b:53.6
occ:1.00
|
O
|
B:HOH372
|
2.3
|
50.0
|
1.0
|
O
|
B:HOH448
|
2.3
|
42.3
|
1.0
|
O
|
B:HOH373
|
2.3
|
42.0
|
1.0
|
OG
|
B:SER106
|
2.5
|
21.5
|
1.0
|
O
|
B:SER156
|
2.7
|
19.9
|
1.0
|
O
|
B:HOH400
|
3.5
|
31.0
|
0.5
|
CB
|
B:SER106
|
3.6
|
21.2
|
1.0
|
C
|
B:SER156
|
3.7
|
19.6
|
1.0
|
O
|
B:HOH446
|
3.9
|
32.6
|
0.3
|
CA
|
B:ALA159
|
4.1
|
18.4
|
0.5
|
CA
|
B:ALA159
|
4.1
|
17.7
|
0.5
|
O
|
B:HOH400
|
4.2
|
27.8
|
0.5
|
CA
|
B:SER156
|
4.2
|
19.9
|
1.0
|
N
|
B:ALA159
|
4.3
|
18.9
|
0.5
|
O
|
B:HOH376
|
4.3
|
26.9
|
1.0
|
N
|
B:ALA159
|
4.3
|
18.5
|
0.5
|
C
|
B:SER158
|
4.4
|
18.7
|
1.0
|
O
|
B:SER158
|
4.4
|
20.5
|
1.0
|
O
|
B:TYR155
|
4.4
|
17.2
|
1.0
|
O
|
B:HOH383
|
4.5
|
25.1
|
1.0
|
CB
|
B:ALA159
|
4.5
|
18.3
|
0.5
|
CB
|
B:ALA159
|
4.6
|
17.7
|
0.5
|
O
|
B:HOH427
|
4.6
|
37.3
|
0.5
|
N
|
B:SER158
|
4.6
|
19.1
|
1.0
|
CA
|
B:SER106
|
4.7
|
20.4
|
1.0
|
N
|
B:ARG157
|
4.7
|
19.1
|
1.0
|
C
|
B:ARG157
|
4.9
|
18.8
|
1.0
|
CZ3
|
B:TRP160
|
4.9
|
36.7
|
0.7
|
CH2
|
B:TRP160
|
4.9
|
36.7
|
0.7
|
|
Sodium binding site 6 out
of 10 in 7kou
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Sodium Binding Sites List in 7kou
Sodium binding site 6 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na201
b:23.8
occ:1.00
|
O
|
C:HOH421
|
2.2
|
22.2
|
1.0
|
O
|
C:GLY38
|
2.4
|
20.3
|
1.0
|
O
|
B:HOH323
|
2.4
|
23.9
|
1.0
|
O
|
B:GLU168
|
2.4
|
22.6
|
1.0
|
O
|
C:GLY47
|
2.5
|
27.5
|
1.0
|
C
|
C:GLY47
|
3.4
|
26.7
|
1.0
|
N
|
C:GLY38
|
3.4
|
18.0
|
1.0
|
C
|
C:GLY38
|
3.4
|
20.0
|
1.0
|
C
|
B:GLU168
|
3.5
|
23.9
|
1.0
|
CA
|
C:GLY47
|
3.5
|
29.4
|
1.0
|
ND2
|
B:ASN39
|
3.7
|
24.8
|
1.0
|
OXT
|
B:GLU168
|
3.8
|
23.3
|
1.0
|
CA
|
C:GLY38
|
3.9
|
18.7
|
1.0
|
CG1
|
C:ILE40
|
4.2
|
20.5
|
1.0
|
CB
|
B:ASN39
|
4.2
|
20.8
|
1.0
|
C
|
C:SER37
|
4.2
|
16.8
|
1.0
|
O
|
C:HOH398
|
4.3
|
30.4
|
1.0
|
CG
|
B:ASN39
|
4.3
|
22.3
|
1.0
|
CA
|
C:SER37
|
4.5
|
16.9
|
1.0
|
N
|
C:ILE40
|
4.5
|
22.0
|
1.0
|
O
|
B:HOH423
|
4.5
|
36.4
|
1.0
|
N
|
C:ASN39
|
4.6
|
21.1
|
1.0
|
N
|
C:ALA48
|
4.7
|
24.0
|
1.0
|
CB
|
C:SER37
|
4.7
|
18.2
|
1.0
|
CA
|
B:GLU168
|
4.7
|
21.8
|
1.0
|
O
|
C:ILE40
|
4.8
|
25.9
|
1.0
|
CD1
|
C:ILE40
|
4.9
|
20.8
|
1.0
|
N
|
C:GLY47
|
5.0
|
30.7
|
1.0
|
|
Sodium binding site 7 out
of 10 in 7kou
Go back to
Sodium Binding Sites List in 7kou
Sodium binding site 7 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na202
b:48.5
occ:1.00
|
O
|
C:HOH356
|
2.3
|
49.4
|
1.0
|
O
|
C:HOH361
|
2.3
|
41.1
|
1.0
|
O2
|
C:PG4204
|
2.7
|
69.3
|
1.0
|
O4
|
C:PG4204
|
2.7
|
51.2
|
1.0
|
O1
|
C:PG4204
|
2.8
|
71.6
|
1.0
|
O3
|
C:PG4204
|
2.9
|
59.0
|
1.0
|
O5
|
C:PG4204
|
2.9
|
56.0
|
1.0
|
C2
|
C:PG4204
|
3.5
|
73.8
|
1.0
|
C1
|
C:PG4204
|
3.5
|
73.1
|
1.0
|
C6
|
C:PG4204
|
3.6
|
57.7
|
1.0
|
C5
|
C:PG4204
|
3.6
|
58.3
|
1.0
|
C7
|
C:PG4204
|
3.6
|
49.4
|
1.0
|
C8
|
C:PG4204
|
3.7
|
57.0
|
1.0
|
C4
|
C:PG4204
|
3.7
|
60.4
|
1.0
|
C3
|
C:PG4204
|
3.8
|
64.7
|
1.0
|
O
|
C:ARG132
|
4.3
|
30.5
|
1.0
|
O
|
C:TRP70
|
4.5
|
22.2
|
1.0
|
O
|
C:HOH354
|
5.0
|
50.1
|
1.0
|
|
Sodium binding site 8 out
of 10 in 7kou
Go back to
Sodium Binding Sites List in 7kou
Sodium binding site 8 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na203
b:23.9
occ:1.00
|
O
|
C:PRO69
|
2.3
|
20.0
|
1.0
|
C
|
C:PRO69
|
3.3
|
18.8
|
1.0
|
CB
|
C:PRO69
|
3.9
|
19.9
|
1.0
|
CA
|
C:PRO69
|
4.0
|
18.5
|
1.0
|
N
|
C:TRP70
|
4.4
|
17.6
|
1.0
|
CD1
|
C:TRP70
|
4.4
|
22.1
|
1.0
|
CA
|
C:TRP70
|
4.6
|
19.3
|
1.0
|
NE1
|
C:TRP70
|
5.0
|
22.5
|
1.0
|
|
Sodium binding site 9 out
of 10 in 7kou
Go back to
Sodium Binding Sites List in 7kou
Sodium binding site 9 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na201
b:27.6
occ:1.00
|
O
|
A:HOH424
|
2.1
|
29.0
|
1.0
|
O
|
D:GLY47
|
2.4
|
26.8
|
1.0
|
O
|
D:GLY38
|
2.4
|
16.6
|
1.0
|
OXT
|
A:GLU168
|
2.4
|
24.1
|
1.0
|
O
|
A:HOH304
|
2.5
|
24.7
|
1.0
|
C
|
D:GLY47
|
3.4
|
26.9
|
1.0
|
N
|
D:GLY38
|
3.4
|
16.3
|
1.0
|
C
|
A:GLU168
|
3.5
|
26.1
|
1.0
|
C
|
D:GLY38
|
3.5
|
17.1
|
1.0
|
CA
|
D:GLY47
|
3.6
|
27.8
|
1.0
|
ND2
|
A:ASN39
|
3.6
|
27.0
|
1.0
|
O
|
A:GLU168
|
3.8
|
26.1
|
1.0
|
CA
|
D:GLY38
|
3.9
|
16.8
|
1.0
|
CG1
|
D:ILE40
|
4.0
|
18.1
|
1.0
|
CB
|
A:ASN39
|
4.1
|
20.3
|
1.0
|
C
|
D:SER37
|
4.2
|
16.1
|
1.0
|
CG
|
A:ASN39
|
4.2
|
23.8
|
1.0
|
O
|
A:HOH458
|
4.4
|
38.8
|
0.5
|
CA
|
D:SER37
|
4.4
|
15.8
|
1.0
|
O
|
A:HOH393
|
4.5
|
35.5
|
1.0
|
N
|
D:ILE40
|
4.6
|
18.1
|
1.0
|
N
|
D:ALA48
|
4.6
|
22.6
|
1.0
|
O
|
D:HOH407
|
4.6
|
32.7
|
1.0
|
CD1
|
D:ILE40
|
4.6
|
18.6
|
1.0
|
N
|
D:ASN39
|
4.7
|
17.9
|
1.0
|
CB
|
D:SER37
|
4.7
|
17.6
|
1.0
|
CA
|
A:GLU168
|
4.8
|
22.2
|
1.0
|
O
|
D:ILE40
|
4.9
|
20.1
|
1.0
|
|
Sodium binding site 10 out
of 10 in 7kou
Go back to
Sodium Binding Sites List in 7kou
Sodium binding site 10 out
of 10 in the 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na202
b:49.7
occ:1.00
|
O
|
D:HOH344
|
2.3
|
47.5
|
1.0
|
O
|
D:HOH392
|
2.3
|
41.0
|
1.0
|
O
|
D:HOH368
|
2.4
|
49.8
|
1.0
|
O5
|
D:PG4203
|
2.7
|
53.3
|
1.0
|
O3
|
D:PG4203
|
2.7
|
42.1
|
1.0
|
O2
|
D:PG4203
|
2.8
|
46.8
|
1.0
|
O4
|
D:PG4203
|
2.8
|
39.6
|
1.0
|
C4
|
D:PG4203
|
3.6
|
44.1
|
1.0
|
C3
|
D:PG4203
|
3.6
|
46.2
|
1.0
|
C5
|
D:PG4203
|
3.6
|
40.5
|
1.0
|
C8
|
D:PG4203
|
3.6
|
51.2
|
1.0
|
C2
|
D:PG4203
|
3.6
|
55.4
|
1.0
|
C6
|
D:PG4203
|
3.7
|
40.3
|
1.0
|
C7
|
D:PG4203
|
3.7
|
47.1
|
1.0
|
O
|
D:ARG132
|
4.3
|
20.6
|
1.0
|
O
|
D:TRP70
|
4.6
|
21.4
|
1.0
|
C1
|
D:PG4203
|
4.8
|
57.0
|
1.0
|
O1
|
D:PG4203
|
5.0
|
57.6
|
1.0
|
|
Reference:
G.Minasov,
L.Shuvalova,
I.Dubrovska,
S.Pshenychnyi,
M.Endres,
K.J.F.Satchell,
Center For Structural Genomics Of Infectious Diseases(Csgid).
1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58. To Be Published.
Page generated: Tue Oct 8 17:25:33 2024
|