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Sodium in PDB, part 245 (files: 9761-9800), PDB 7lr0-7mik

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9761-9800 (PDB 7lr0-7mik).
  1. 7lr0 (Na: 1) - Structure of Squirrel TRPV1 in Complex with Capsaicin
  2. 7lsf (Na: 2) - Crystal Structure of the Human Neutralizing Antibody Fab Fragment T025 Bound to Tbev Ediii (Western Subtype)
  3. 7lst (Na: 1) - Ruminococcus Bromii AMY12-D392A with 63-A-D-Glucosyl-Maltotriosyl- Maltotriose
    Other atoms: Ca (1);
  4. 7lsu (Na: 1) - Ruminococcus Bromii AMY12-D392A with 63-A-D-Glucosyl-Maltotriose
    Other atoms: Ca (1);
  5. 7ltw (Na: 2) - Crystal Structure of the Mouse KIRREL2 D1 Homodimer
  6. 7lu6 (Na: 8) - Crystal Structure of the Mouse KIRREL3 D1 Homodimer
  7. 7lul (Na: 1) - Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide
  8. 7lw9 (Na: 1) - Human Exonuclease 5 Crystal Structure in Complex with Ssdna, Sm, and Na
    Other atoms: Fe (4); Sm (2);
  9. 7lyi (Na: 1) - Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease in Complex with Inhibitor UAWJ9-36-3
  10. 7lz2 (Na: 2) - Structure of Glutamate Receptor-Like Channel GLR3.4 Ligand-Binding Domain in Complex with Methionine
    Other atoms: Cl (4);
  11. 7m14 (Na: 1) - X-Ray Structure of CJ1430 in the Presence of Gdp, A Gdp-D-Glycero-4- Keto-D-Lyxo-Heptose-3,5-Epimerase From Campylobacter Jejuni
  12. 7m1y (Na: 2) - The Crystal Structure of Papain-Like Protease of Sars Cov-2, C111S Mutant, in Complex with Ebselen
    Other atoms: Cl (2); Zn (2); I (13);
  13. 7m2l (Na: 2) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with N-(4'-Trifluoromethoxybenzoyl)-2- Amino-1-Ethylphosphate (F6F) Inhibitor at the Alpha-and Beta-Site, Sodium Ion at the Metal Coordination Site, and Another F6F Molecule at the Enzyme Beta-Site at 1.60 Angstrom Resolution. Two of the Beta- Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
    Other atoms: Cl (6); F (6);
  14. 7m3q (Na: 2) - Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)
    Other atoms: Cl (6);
  15. 7m3s (Na: 2) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with N-(4'-Trifluoromethoxybenzoyl)-2- Amino-1-Ethylphosphate (F6F) Inhibitor at the Alpha-and Beta-Site, Sodium Ion at the Metal Coordination Site, and Another F6F Molecule at the Enzyme Beta-Site at 1.55 Angstrom Resolution. One of the Beta- Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
    Other atoms: F (6); Cl (2);
  16. 7m8q (Na: 1) - Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit with Fluorosubstituted Tryptophans
    Other atoms: Fe (4); F (4);
  17. 7m8t (Na: 2) - Crystal Structure of Hla-A*11:01 in Complex with Nsasfstfk, An 9-Mer Epitope From Sars-Cov-2 Spike (S370-378)
    Other atoms: Ca (1); Cl (2);
  18. 7m8u (Na: 3) - Crystal Structure of Hla-B*35:01 in Complex with Ipfamqmay, An 9-Mer Epitope From Sars-Cov-2 Spike (S896-904)
  19. 7m8w (Na: 1) - Xfel Crystal Structure of the Prostaglandin D2 Receptor CRTH2 in Complex with 15R-Methyl-PGD2
  20. 7mcb (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme
  21. 7mcl (Na: 1) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma-Lyase, Plp Bound
  22. 7mcn (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma-Lyase, Holoenzyme with High Hepes
  23. 7mcp (Na: 6) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma-Lyase, Holoenzyme Dimer
  24. 7mcq (Na: 4) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase, Aoaa-Bound Enzyme in Dimeric Form
  25. 7mct (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase, Holoenzyme with Bound NL1
    Other atoms: Br (5);
  26. 7mcu (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase, Holoenzyme with Bound NL2
    Other atoms: Br (1);
  27. 7mcy (Na: 3) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase, Holoenzyme with Bound NL3
    Other atoms: Cl (1);
  28. 7md0 (Na: 3) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme in the Presence of NL1F3
  29. 7md1 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103N Mutant
  30. 7md6 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103N Mutant Co-Crystallized with NL1
    Other atoms: Br (7);
  31. 7md8 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103N Mutant Co-Crystallized with NL2
  32. 7md9 (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant
  33. 7mda (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant Co-Crystallized with NL1
    Other atoms: Br (2);
  34. 7mdb (Na: 2) - Crystal Structure of Staphylococcus Aureus Cystathionine Gamma Lyase Holoenzyme Y103A Mutant Co-Crystallized with NL2
    Other atoms: As (2); Br (2);
  35. 7me8 (Na: 1) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with N-(4'-Trifluoromethoxybenzoyl)-2- Amino-1-Ethylphosphate (F6F) Inhibitor at the Beta-Site, Sodium Ion at the Metal Coordination Site and Dual Beta-Q114 Rotamer Conformation at 1.60 Angstrom Resolution
    Other atoms: F (3);
  36. 7mfp (Na: 2) - Crystal Structure of the L136 Aminotransferase K185A From Acanthamoeba Polyphaga Mimivirus in the Presence of the Udp-Viosamine External Aldimine
    Other atoms: Cl (8);
  37. 7mfq (Na: 2) - Crystal Structure of the L136 Aminotransferase From Acanthamoeba Polyphaga Mimivirus in Complex with the Tdp-Viosamine External Aldimine
    Other atoms: Cl (8);
  38. 7mgu (Na: 5) - Improved Ligand Discovery Using Micro-Beam Data Collection at the Edge of Protein Crystals
  39. 7mij (Na: 2) - Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 4 Degrees Celsius
  40. 7mik (Na: 4) - Mouse TRPV3 in MSP2N2 Nanodiscs, Closed State at 42 Degrees Celsius
Page generated: Fri Dec 24 09:56:13 2021

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