Sodium in PDB, part 245 (files: 9761-9800),
PDB 7kkb-7ktg
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9761-9800 (PDB 7kkb-7ktg).
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7kkb (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81C with Bromide
Other atoms:
Br (2);
F (2);
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7kkg (Na: 3) - Dihydrodipicolinate Synthase (Dhdps) From C.Jejuni, N84D Mutant with Pyruvate Bound in the Active Site and L-Lysine Bound at the Allosteric Site
Other atoms:
Mg (21);
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7kkh (Na: 2) - P1A4 Fab in Complex with ARS1620
Other atoms:
Cl (1);
F (2);
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7kkr (Na: 1) - Fluoride Channel Fluc-EC2 Wild-Type with Bromide
Other atoms:
Br (2);
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7km6 (Na: 2) - APOBEC3B Antibody 5G7 Fv-Clasp
Other atoms:
Cl (3);
-
7kme (Na: 2) - Crystal Structure of Human Alpha-Thrombin Inhibited with SEL2711.
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7kmj (Na: 3) - Hsa Siglec and Unique Domains in Complex with Sialyl Lewis C
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7kn8 (Na: 2) - Crystal Structure of the GH74 Xyloglucanase From Xanthomonas Campestris (XCC1752)
Other atoms:
I (14);
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7knf (Na: 4) - 1.80A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-1 Nhoh)
Other atoms:
Zn (4);
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7kng (Na: 4) - 2.10A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-2 Y7F)
Other atoms:
Zn (4);
Cl (4);
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7knk (Na: 1) - Structure of Hen Egg-White Lysozyme Grown with Kitchen Recipe
Other atoms:
Cl (1);
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7kom (Na: 1) - High Resolution Crystal Structure of Putative Pterin Binding Protein Prur (VV2_1280) From Vibrio Vulnificus CMCP6
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7kos (Na: 5) - 1.50 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
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7kou (Na: 10) - 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Other atoms:
Cl (2);
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7krg (Na: 4) - Crystal Structure of Mannitol Dehydrogenase (Chmdh) From Cladosporium Herbarum in Complex with Nadp+ and Na
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7kss (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN)
Other atoms:
Ca (2);
Cl (1);
-
7kst (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Reaction State Ternary Complex, 10 Mm MN2+ (2MIN)
Other atoms:
Mn (6);
-
7ksu (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (4MIN)
Other atoms:
Mn (7);
-
7ksv (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (960MIN)
Other atoms:
Mn (6);
-
7ksw (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Reaction State Ternary Complex, 10 Mm MG2+ (10MIN)
Other atoms:
Cl (1);
Mg (3);
-
7ksx (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MG2+ (30MIN)
Other atoms:
Mg (1);
-
7ksy (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MG2+ (960MIN)
Other atoms:
Mg (1);
-
7ksz (Na: 1) - Dna Polymerase Mu, Dgtp:at Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (960MIN)
Other atoms:
Ca (2);
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7kt0 (Na: 1) - Dna Polymerase Mu, Dgtp:at Ground State Ternary Complex, 50 Mm MG2+ (60MIN)
Other atoms:
Mg (2);
Cl (1);
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7kt1 (Na: 1) - Dna Polymerase Mu, Dgtp:at Reaction State Ternary Complex, 50 Mm MN2+ (180MIN)
Other atoms:
Cl (1);
Mn (6);
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7kt2 (Na: 1) - Dna Polymerase Mu, Dgtp:at Product State Ternary Complex, 50 Mm MN2+ (225MIN)
Other atoms:
Mn (7);
-
7kt3 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Pre-Catalytic Ground State Ternary Complex, 20 Mm CA2+ (120MIN)
Other atoms:
Cl (3);
Ca (3);
-
7kt4 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Reaction State Ternary Complex, 10 Mm MN2+ (30MIN)
Other atoms:
Mn (4);
Cl (2);
-
7kt5 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN)
Other atoms:
Mn (7);
Cl (1);
-
7kt6 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (960MIN)
Other atoms:
Mn (6);
-
7kt7 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (60MIN)
Other atoms:
Mg (2);
Cl (1);
-
7kt8 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)
Other atoms:
Cl (1);
Mg (2);
-
7kt9 (Na: 2) - Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN)
Other atoms:
Cl (1);
Mg (1);
-
7kta (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Pre-Catalytic Ground State Ternary Complex, 20 Mm CA2+ (120MIN)
Other atoms:
Ca (2);
Cl (1);
-
7ktb (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Reaction State Ternary Complex, 10 Mm MN2+ (40MIN)
Other atoms:
Mn (9);
-
7ktc (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (120MIN)
Other atoms:
Mn (7);
-
7ktd (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (960MIN)
Other atoms:
Mn (6);
-
7kte (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Reaction State Ternary Complex, 50 Mm MG2+ (90MIN)
Other atoms:
Cl (1);
Mg (2);
-
7ktf (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (180MIN)
Other atoms:
Mg (2);
-
7ktg (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:Ct Product State Ternary Complex, 50 Mm MG2+ (960MIN)
Other atoms:
Cl (1);
Mg (2);
Page generated: Wed Nov 13 13:06:35 2024
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