Sodium in PDB 7d2r: Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V

The structure of Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V, PDB code: 7d2r was solved by Y.Murase, Y.Watanabe, S.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.40 / 2.01
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.76, 72.678, 58.986, 90, 99.68, 90
R / Rfree (%)	18.8 / 23.3

The structure of Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V (pdb code 7d2r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V, PDB code: 7d2r:

Sodium binding site 1 out of 1 in the Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Agrobacterium Tumefaciens Aconitase X Mutant - S449C/C510V within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:25.9 occ:1.00 O1 A:GOL602 2.8 33.2 1.0 OH A:TYR534 3.0 26.3 1.0 OG A:SER293 3.2 33.6 1.0 C A:GLY69 3.2 26.1 1.0 CA A:GLY69 3.3 24.9 1.0 N A:SER70 3.5 25.6 1.0 O A:HOH752 3.5 23.1 1.0 CE2 A:TYR534 3.6 22.5 1.0 O A:GLY69 3.7 26.8 1.0 CA A:THR394 3.7 25.9 1.0 CZ A:TYR534 3.8 27.1 1.0 O A:GLY393 3.8 31.3 1.0 CA A:SER70 3.8 26.0 1.0 C A:GLY393 3.8 28.8 1.0 CE A:LYS530 3.9 26.3 1.0 N A:THR394 3.9 22.4 1.0 NZ A:LYS530 4.1 27.6 1.0 CG2 A:THR394 4.1 23.7 1.0 C1 A:GOL602 4.1 36.1 1.0 CB A:SER293 4.2 28.5 1.0 CB A:SER70 4.3 26.0 1.0 CB A:THR394 4.4 23.8 1.0 CA A:GLY393 4.6 22.0 1.0 N A:GLY69 4.7 24.5 1.0 O2 A:GOL602 4.9 44.5 1.0 CD2 A:TYR534 4.9 25.8 1.0 C A:THR394 4.9 24.4 1.0 CD A:LYS530 4.9 23.3 1.0 C2 A:GOL602 5.0 35.1 1.0

Y.Murase, S.Watanabe, Y.Watanabe. Crystal Structures of Aconitase X As Cis-3-Hydroxy-L-Proline Dehydratase and Mevalonate 5-Phosphate Dehydratase To Be Published.