Sodium in PDB 7cyf: Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803

The binding sites of Sodium atom in the Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803 (pdb code 7cyf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803, PDB code: 7cyf:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:30.0 occ:1.00 O A:PHE110 2.2 50.4 1.0 O A:ALA320 2.6 52.4 1.0 O A:ALA112 2.7 50.6 1.0 O A:SER322 2.8 50.3 1.0 O A:GLY111 2.9 51.7 1.0 C A:GLY111 3.3 51.7 1.0 C A:ALA320 3.3 52.4 1.0 C A:PHE110 3.4 50.4 1.0 O A:ILE319 3.6 51.8 1.0 C A:ALA112 3.6 50.6 1.0 CA A:ALA320 3.7 52.4 1.0 CA A:GLY111 3.9 51.7 1.0 N A:ALA112 3.9 50.6 1.0 C A:SER322 4.0 50.3 1.0 N A:GLY111 4.0 51.7 1.0 N A:SER322 4.2 50.3 1.0 N A:ALA321 4.3 51.1 1.0 CA A:ALA112 4.4 50.6 1.0 C A:ILE319 4.4 51.8 1.0 N A:VAL113 4.4 50.3 1.0 N A:ALA320 4.5 52.4 1.0 CA A:PHE110 4.5 50.4 1.0 CA A:VAL113 4.6 50.3 1.0 C A:ALA321 4.7 51.1 1.0 CA A:SER322 4.7 50.3 1.0 OG A:SER322 4.7 50.3 1.0 CA A:ALA321 4.8 51.1 1.0 CB A:ALA320 4.8 52.4 1.0 CG A:MET143 4.9 59.6 1.0 N A:SER323 5.0 49.1 1.0

Sodium binding site 2 out of 3 in the Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:20.0 occ:1.00 O B:PHE110 2.1 48.8 1.0 O B:ALA112 2.4 49.1 1.0 O B:ALA320 2.7 51.7 1.0 O B:SER322 2.7 49.1 1.0 O B:GLY111 2.9 50.3 1.0 C B:GLY111 3.2 50.3 1.0 C B:PHE110 3.2 48.8 1.0 O B:ILE319 3.4 51.0 1.0 C B:ALA320 3.5 51.7 1.0 C B:ALA112 3.5 49.1 1.0 CA B:GLY111 3.7 50.3 1.0 CA B:ALA320 3.8 51.7 1.0 N B:GLY111 3.9 50.3 1.0 N B:ALA112 3.9 49.1 1.0 C B:SER322 3.9 49.1 1.0 CA B:ALA112 4.4 49.1 1.0 C B:ILE319 4.4 51.0 1.0 CA B:PHE110 4.4 48.8 1.0 N B:SER322 4.4 49.1 1.0 N B:VAL113 4.5 49.0 1.0 N B:ALA321 4.5 50.3 1.0 N B:ALA320 4.6 51.7 1.0 CA B:VAL113 4.6 49.0 1.0 CG1 B:VAL113 4.8 49.0 1.0 CA B:SER322 4.8 49.1 1.0 C B:ALA321 4.8 50.3 1.0 N B:SER323 4.8 47.5 1.0 CA B:SER323 4.9 47.5 1.0 CG B:MET143 4.9 56.7 1.0 OG B:SER322 5.0 49.1 1.0 CB B:ALA320 5.0 51.7 1.0

Sodium binding site 3 out of 3 in the Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Cryo-Em Structure of Bicarbonate Transporter Sbta in Complex with Pii- Like Signaling Protein Sbtb From Synechocystis Sp. Pcc 6803 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:20.0 occ:1.00 O C:PHE110 2.0 49.6 1.0 O C:SER322 2.5 49.0 1.0 O C:ALA112 2.6 49.0 1.0 O C:ALA320 2.7 51.0 1.0 O C:GLY111 2.9 50.3 1.0 C C:PHE110 3.2 49.6 1.0 C C:GLY111 3.3 50.3 1.0 C C:ALA320 3.3 51.0 1.0 O C:ILE319 3.4 50.4 1.0 C C:ALA112 3.7 49.0 1.0 CA C:GLY111 3.7 50.3 1.0 C C:SER322 3.7 49.0 1.0 CA C:ALA320 3.8 51.0 1.0 N C:GLY111 3.9 50.3 1.0 N C:ALA112 4.0 49.0 1.0 N C:ALA321 4.2 50.1 1.0 N C:SER322 4.2 49.0 1.0 CA C:PHE110 4.3 49.6 1.0 C C:ILE319 4.3 50.4 1.0 C C:ALA321 4.3 50.1 1.0 CA C:ALA112 4.4 49.0 1.0 N C:ALA320 4.5 51.0 1.0 CA C:SER322 4.6 49.0 1.0 N C:VAL113 4.6 48.7 1.0 CA C:ALA321 4.6 50.1 1.0 OG C:SER322 4.7 49.0 1.0 O C:ALA321 4.7 50.1 1.0 N C:SER323 4.7 48.1 1.0 CA C:SER323 4.8 48.1 1.0 CA C:VAL113 4.8 48.7 1.0 O C:LEU109 4.9 48.4 1.0 CB C:PHE110 5.0 49.6 1.0

X.Y.Liu, W.T.Hou, L.Wang, B.Li, Y.X.Chen, Y.L.Jiang, C.Z.Zhou. Structures of Cyanobacterial Bicarbonate Transporter Sbta and Its Complex with Pii-Like Sbtb Cell Discov 2021.
ISSN: ESSN 2056-5968