Sodium in PDB 7cy1: Crystal Structure of Mglc From Myxococcus Xanthus

The structure of Crystal Structure of Mglc From Myxococcus Xanthus, PDB code: 7cy1 was solved by K.G.Thakur, S.Kapoor, A.Kodesia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.98 / 2.19
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	96.91, 96.91, 58.05, 90, 90, 120
R / Rfree (%)	18.8 / 22.7

The binding sites of Sodium atom in the Crystal Structure of Mglc From Myxococcus Xanthus (pdb code 7cy1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mglc From Myxococcus Xanthus, PDB code: 7cy1:

Sodium binding site 1 out of 1 in the Crystal Structure of Mglc From Myxococcus Xanthus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mglc From Myxococcus Xanthus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:45.2 occ:1.00 O A:THR66 2.2 44.6 1.0 O A:HOH331 2.3 44.9 1.0 O A:LEU64 2.3 44.1 1.0 O A:VAL69 2.4 35.8 1.0 O A:HOH335 2.6 56.1 1.0 O A:HOH325 3.3 55.1 1.0 C A:LEU64 3.4 40.2 1.0 C A:THR66 3.5 49.5 1.0 C A:VAL69 3.6 37.7 1.0 O A:GLY67 4.0 48.9 1.0 C A:LYS65 4.2 46.3 1.0 N A:THR66 4.2 46.1 1.0 C A:GLY67 4.2 43.7 1.0 CA A:LEU64 4.2 38.2 1.0 N A:VAL69 4.2 40.0 1.0 CA A:GLY67 4.3 47.5 1.0 CD2 A:LEU85 4.3 46.1 1.0 N A:GLY67 4.3 47.6 1.0 N A:LYS65 4.4 44.1 1.0 CA A:VAL69 4.4 39.0 1.0 O A:LYS65 4.4 56.3 1.0 CA A:THR66 4.5 48.9 1.0 N A:SER70 4.5 35.0 1.0 CA A:LYS65 4.6 47.1 1.0 CA A:SER70 4.6 39.1 1.0 CB A:VAL69 4.7 38.5 1.0 OG1 A:THR66 4.8 50.7 1.0 N A:THR68 4.9 41.9 1.0 O A:THR63 4.9 39.7 1.0 O A:HOH302 5.0 31.4 1.0 CB A:LEU85 5.0 39.1 1.0 C A:THR68 5.0 42.7 1.0 CB A:LEU64 5.0 38.3 1.0

S.Kapoor, A.Kodesia, N.Kalidas, F.Ashish, K.G.Thakur. Structural Characterization of Myxococcus Xanthus Mglc, A Component of the Polarity Control System, and Its Interactions with Its Paralog Mglb. J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X