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Sodium in PDB 7cvj: Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)

Enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)

All present enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms):
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvj was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.18 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.450, 79.450, 38.450, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 18.5

Other elements in 7cvj:

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) (pdb code 7cvj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvj:

Sodium binding site 1 out of 1 in 7cvj

Go back to Sodium Binding Sites List in 7cvj
Sodium binding site 1 out of 1 in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:21.2
occ:1.00
 O A:CYS82 2.4 16.8 1.0
O A:SER78 2.4 20.3 1.0
O A:HOH374 2.4 30.3 1.0
O A:ARG91 2.5 27.1 1.0
O A:HOH355 2.5 21.9 1.0
OG A:SER90 2.5 25.1 1.0
HB2 A:SER90 2.8 33.0 1.0
HA A:ASN83 3.0 21.2 1.0
CB A:SER90 3.2 27.4 1.0
C A:CYS82 3.4 15.2 1.0
C A:ARG91 3.6 23.9 1.0
C A:SER78 3.6 15.6 1.0
HB2 A:SER78 3.7 16.4 1.0
HB3 A:SER90 3.8 33.0 1.0
H A:CYS82 3.8 18.6 1.0
HB A:THR87 3.9 23.7 1.0
HA A:SER78 3.9 16.9 1.0
CA A:ASN83 3.9 17.7 1.0
N A:ARG91 4.0 22.6 1.0
HB2 A:ASN92 4.1 25.9 1.0
HA A:ASN92 4.1 25.6 1.0
H A:ARG91 4.1 27.1 1.0
N A:ASN83 4.1 16.5 1.0
C A:SER90 4.1 32.8 1.0
H A:ASP84 4.1 18.6 1.0
CA A:SER78 4.2 14.0 1.0
CA A:SER90 4.3 26.7 1.0
HA A:ARG79 4.4 27.9 1.0
N A:CYS82 4.4 15.5 1.0
CB A:SER78 4.4 13.6 1.0
CA A:ARG91 4.4 23.9 1.0
N A:ASN92 4.4 22.4 1.0
C A:ARG79 4.5 24.5 1.0
HB2 A:ASN83 4.6 22.5 1.0
CA A:CYS82 4.6 17.1 1.0
O A:ARG79 4.6 22.2 1.0
CA A:ASN92 4.6 21.3 1.0
N A:ARG79 4.6 18.0 1.0
O A:SER90 4.7 28.9 1.0
CA A:ARG79 4.7 23.2 1.0
OD1 A:ASN83 4.8 27.6 1.0
N A:ASP84 4.8 15.5 1.0
CB A:ASN92 4.8 21.6 1.0
CB A:THR87 4.8 19.7 1.0
CB A:ASN83 4.8 18.7 1.0
O A:HOH380 4.8 41.2 1.0
H A:TRP81 4.8 19.9 1.0
N A:TRP80 4.8 17.9 1.0
HA A:ARG91 4.9 28.7 1.0
HG A:SER78 4.9 18.9 1.0
HG21 A:THR87 4.9 23.4 1.0
O A:HOH378 4.9 21.8 1.0
HA A:SER90 4.9 32.1 1.0
C A:ASN83 4.9 15.5 1.0
H A:ASN83 4.9 19.9 1.0
O A:THR87 5.0 24.3 1.0
H A:SER90 5.0 32.6 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Tue Oct 8 16:25:44 2024

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