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Sodium in PDB 7cre: Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element

Protein crystallography data

The structure of Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element, PDB code: 7cre was solved by J.Yao, Q.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.611, 61.611, 144.544, 90, 90, 120
R / Rfree (%) 25.8 / 27.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element (pdb code 7cre). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element, PDB code: 7cre:

Sodium binding site 1 out of 1 in 7cre

Go back to Sodium Binding Sites List in 7cre
Sodium binding site 1 out of 1 in the Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hnrnpk KH3 Domain in Complex with A Ssdna Fragment From the Sirloin Element within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na500

b:107.9
occ:0.50
CD2 A:TYR449 3.6 210.8 1.0
CD2 A:LEU450 3.8 144.1 1.0
CE2 A:TYR449 4.0 206.4 1.0
CG A:TYR449 4.7 202.1 1.0

Reference:

J.Yao, Y.Tu, C.Shen, Q.Zhou, H.Xiao, D.Jia, Q.Sun. Nuclear Import Receptors and Hnrnpk Mediates Nuclear Import and Stress Granule Localization of Sirloin. Cell.Mol.Life Sci. V. 78 7617 2021.
ISSN: ESSN 1420-9071
PubMed: 34689235
DOI: 10.1007/S00018-021-03992-7
Page generated: Tue Oct 8 16:25:04 2024

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