Atomistry » Sodium » PDB 7chl-7d78 » 7cm8
Atomistry »
  Sodium »
    PDB 7chl-7d78 »
      7cm8 »

Sodium in PDB 7cm8: High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae

Enzymatic activity of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae

All present enzymatic activity of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae:
2.5.1.47;

Protein crystallography data

The structure of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae, PDB code: 7cm8 was solved by A.Kaushik, R.Rahisuddin, N.Saini, S.Kumaran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.56 / 1.90
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 112.440, 112.440, 44.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.1

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae (pdb code 7cm8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae, PDB code: 7cm8:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in 7cm8

Go back to Sodium Binding Sites List in 7cm8
Sodium binding site 1 out of 5 in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:39.1
occ:1.00
 OH A:TYR305 2.5 26.0 1.0
O A:GLN227 2.8 23.0 1.0
N A:SER272 2.9 20.8 1.0
CZ A:TYR305 3.1 29.8 1.0
OG A:SER272 3.1 21.2 1.0
C2' A:LLP42 3.1 24.4 1.0
CB A:SER272 3.2 19.6 1.0
CE1 A:TYR305 3.3 26.3 1.0
NA A:NA406 3.5 31.4 1.0
N A:ILE271 3.5 24.4 1.0
CA A:SER272 3.6 19.8 1.0
C A:ILE271 3.8 21.0 1.0
C A:GLN227 3.8 26.9 1.0
OG A:SER300 3.9 34.5 1.0
CA A:ILE271 4.0 24.0 1.0
CB A:ILE271 4.0 25.2 1.0
C A:GLY270 4.1 26.0 1.0
CE2 A:TYR305 4.2 27.2 1.0
C2 A:LLP42 4.3 21.5 1.0
CB A:GLN227 4.4 26.9 1.0
CA A:GLY270 4.5 26.2 1.0
CA A:GLN227 4.5 26.9 1.0
CD1 A:TYR305 4.5 24.1 1.0
N A:GLN227 4.5 26.6 1.0
N1 A:LLP42 4.5 22.6 1.0
C A:SER272 4.8 17.9 1.0
N A:SER273 4.8 20.0 1.0
N A:GLY228 4.9 28.2 1.0
O A:GLY270 4.9 24.2 1.0
CG2 A:ILE271 4.9 27.6 1.0
O A:ILE271 4.9 25.4 1.0

Sodium binding site 2 out of 5 in 7cm8

Go back to Sodium Binding Sites List in 7cm8
Sodium binding site 2 out of 5 in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:24.2
occ:1.00
 N A:VAL28 2.9 21.3 1.0
O A:PHE22 2.9 24.9 1.0
CA A:GLY26 3.0 26.7 1.0
C A:GLY26 3.0 27.8 1.0
N A:ASN27 3.1 25.0 1.0
O A:HOH558 3.1 26.5 1.0
O A:LEU19 3.2 22.4 1.0
O A:VAL28 3.3 21.7 1.0
N A:GLY26 3.5 26.4 1.0
CB A:VAL28 3.6 19.3 1.0
CA A:VAL28 3.6 21.6 1.0
O A:GLY26 3.7 33.0 1.0
CA A:GLY23 3.8 22.8 1.0
C A:PHE22 3.9 23.2 1.0
OD1 A:ASN27 3.9 23.4 1.0
C A:ASN27 3.9 24.5 1.0
C A:VAL28 3.9 23.1 1.0
CG2 A:VAL28 4.0 22.3 1.0
CA A:ASN27 4.0 24.5 1.0
C A:LEU19 4.1 27.0 1.0
N A:HIS24 4.2 21.8 1.0
C A:GLY23 4.2 24.8 1.0
CB A:LEU19 4.2 24.6 1.0
N A:GLY23 4.3 23.4 1.0
N A:LEU19 4.4 23.6 1.0
CA A:LEU19 4.5 25.1 1.0
C A:ASN25 4.8 27.9 1.0
CG A:ASN27 4.8 24.9 1.0
CG A:ARG18 4.9 26.2 1.0
CB A:ASN27 4.9 23.9 1.0
CG1 A:VAL28 5.0 18.4 1.0
O A:HIS24 5.0 23.4 1.0

Sodium binding site 3 out of 5 in 7cm8

Go back to Sodium Binding Sites List in 7cm8
Sodium binding site 3 out of 5 in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na404

b:21.9
occ:1.00
 OP2 A:LLP42 2.7 25.5 1.0
N A:ILE182 2.8 23.2 1.0
O A:GLY175 3.2 16.8 1.0
N A:SER181 3.4 26.1 1.0
O A:GLY179 3.5 18.4 1.0
CB A:SER181 3.5 28.8 1.0
C A:GLY179 3.6 18.0 1.0
CG2 A:ILE182 3.6 24.6 1.0
CB A:ILE182 3.6 25.7 1.0
P A:LLP42 3.6 24.2 1.0
OP3 A:LLP42 3.6 16.8 1.0
CA A:GLY179 3.6 18.1 1.0
C A:SER181 3.7 25.9 1.0
CA A:SER181 3.7 24.9 1.0
CA A:ILE182 3.7 25.6 1.0
CG2 A:VAL176 3.9 21.8 1.0
CA A:VAL176 4.1 19.4 1.0
N A:GLY179 4.1 20.0 1.0
N A:GLY180 4.1 22.4 1.0
CB A:ALA174 4.2 15.3 1.0
OP4 A:LLP42 4.2 25.5 1.0
OG A:SER181 4.2 27.9 1.0
C A:GLY175 4.2 18.7 1.0
C A:GLY180 4.3 24.6 1.0
O A:HOH560 4.4 23.4 1.0
CB A:VAL176 4.5 19.6 1.0
N A:VAL176 4.6 17.6 1.0
O A:ALA174 4.8 15.3 1.0
O A:HOH548 4.8 26.7 1.0
CA A:GLY180 4.8 26.3 1.0
N A:THR183 4.8 21.6 1.0
C A:ILE182 4.9 24.2 1.0
O A:SER181 4.9 24.0 1.0
C5' A:LLP42 4.9 26.8 1.0
C A:ALA174 4.9 13.8 1.0
OP1 A:LLP42 4.9 17.6 1.0
N A:GLY177 4.9 21.9 1.0
CG1 A:VAL176 4.9 20.5 1.0

Sodium binding site 4 out of 5 in 7cm8

Go back to Sodium Binding Sites List in 7cm8
Sodium binding site 4 out of 5 in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na406

b:31.4
occ:1.00
 OG A:SER272 2.6 21.2 1.0
OG A:SER300 2.9 34.5 1.0
OG A:SER273 2.9 25.5 1.0
N A:SER273 3.0 20.0 1.0
N A:SER300 3.3 22.2 1.0
CB A:SER273 3.3 24.6 1.0
CA A:GLY270 3.4 26.2 1.0
C A:GLY270 3.5 26.0 1.0
NA A:NA401 3.5 39.1 1.0
N A:SER272 3.5 20.8 1.0
N A:GLY270 3.6 25.9 1.0
CD A:PRO299 3.6 21.4 1.0
CB A:SER272 3.7 19.6 1.0
O A:GLY270 3.7 24.2 1.0
CA A:SER273 3.7 21.2 1.0
C A:SER272 3.7 17.9 1.0
CA A:SER272 3.8 19.8 1.0
CB A:PRO299 3.9 19.8 1.0
CB A:SER300 3.9 26.6 1.0
N A:PRO299 3.9 18.2 1.0
OH A:TYR305 4.0 26.0 1.0
CG A:PRO299 4.0 22.1 1.0
CA A:SER300 4.0 24.1 1.0
N A:ILE271 4.1 24.4 1.0
C2' A:LLP42 4.1 24.4 1.0
C A:PRO299 4.2 21.4 1.0
O A:SER300 4.2 20.5 1.0
CA A:PRO299 4.2 21.0 1.0
C A:SER300 4.3 22.8 1.0
C A:ILE271 4.4 21.0 1.0
C A:LEU298 4.6 18.4 1.0
CZ A:TYR305 4.7 29.8 1.0
O A:SER272 4.7 17.8 1.0
N1 A:LLP42 4.8 22.6 1.0
C A:ALA269 4.8 26.0 1.0
CA A:ILE271 4.9 24.0 1.0
CE2 A:TYR305 4.9 27.2 1.0
C2 A:LLP42 4.9 21.5 1.0

Sodium binding site 5 out of 5 in 7cm8

Go back to Sodium Binding Sites List in 7cm8
Sodium binding site 5 out of 5 in the High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na407

b:35.4
occ:1.00
 O A:HOH541 2.5 17.9 1.0
O A:SER272 2.7 17.8 1.0
CA A:GLY175 3.3 16.7 1.0
C A:SER272 3.4 17.9 1.0
N A:GLY175 3.5 16.2 1.0
CB A:SER272 3.6 19.6 1.0
CG2 A:ILE229 3.8 24.3 1.0
OG A:SER272 3.8 21.2 1.0
CB A:ALA276 3.9 21.3 1.0
CG A:PRO299 3.9 22.1 1.0
CA A:SER272 3.9 19.8 1.0
CD A:PRO299 4.1 21.4 1.0
N A:ALA276 4.1 20.7 1.0
C A:GLY175 4.3 18.7 1.0
C6 A:LLP42 4.4 21.8 1.0
O A:HOH560 4.4 23.4 1.0
N A:SER273 4.4 20.0 1.0
O A:ILE297 4.5 14.5 1.0
CA A:ALA276 4.5 23.1 1.0
N1 A:LLP42 4.5 22.6 1.0
O A:GLY175 4.7 16.8 1.0
CD1 A:ILE229 4.7 23.1 1.0
C A:ALA174 4.7 13.8 1.0
CB A:ALA275 4.8 26.0 1.0
CA A:SER273 4.9 21.2 1.0

Reference:

A.Kaushik, R.Rahisuddin, N.Saini, S.Kumaran. High Resolution Crystal Structure of M92A Mutant of O-Acetyl-L-Serine Sulfhydrylase From Haemophilus Influenzae To Be Published.
Page generated: Mon Aug 18 09:27:58 2025

Last articles

Zn in 3NHU
Zn in 3NHW
Zn in 3NHS
Zn in 3NHR
Zn in 3NHP
Zn in 3NHL
Zn in 3NGJ
Zn in 3NHK
Zn in 3NHJ
Zn in 3NHF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy