Sodium in PDB, part 180 (files: 7161-7200),
PDB 5vy2-5wjo
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7161-7200 (PDB 5vy2-5wjo).
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5vy2 (Na: 1) - Crystal Structure of the F36A Mutant of HSNUDT16
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5vyb (Na: 1) - Structure of the Carbohydrate Recognition Domain of Dectin-2 Complexed with A Mammalian-Type High Mannose MAN9GLCNAC2 Oligosaccharide
Other atoms:
Ca (2);
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5vyl (Na: 1) - Crystal Structure of N-Terminal Half of Herpes Simplex Virus Type 1 UL37 Protein
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5vyq (Na: 4) - Crystal Structure of the N-Formyltransferase RV3404C From Mycobacterium Tuberculosis in Complex with Ydp-QUI4N and Folinic Acid
Other atoms:
K (1);
Cl (3);
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5vyy (Na: 1) - Structure of Human HSP90-Alpha Bound to Resorcinylic Inhibitor Bnim
Other atoms:
Mg (1);
Cl (1);
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5vz7 (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (G433A) Mutant with Incoming Nonhydrolyzable Umpnpp
Other atoms:
Mg (2);
Cl (1);
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5vz8 (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (G433A) Mutant with Incoming Utp
Other atoms:
Mg (2);
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5vz9 (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (G433A) Mutant with Incoming Dttp
Other atoms:
Mg (2);
Cl (1);
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5vza (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (G433S) Mutant with Incoming Nonhydrolyzable Umpnpp
Other atoms:
Mg (2);
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5vzb (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (G433S) Mutant with Incoming Utp
Other atoms:
Mg (3);
Cl (2);
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5vzc (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (G433S) Mutant with Incoming Dttp
Other atoms:
Mg (2);
Cl (1);
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5vzd (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (W434A) Mutant with Incoming Nonhydrolyzable Umpnpp
Other atoms:
Mg (2);
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5vze (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (W434A) Mutant with Incoming Utp
Other atoms:
Mg (3);
Cl (1);
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5vzf (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (W434A) Mutant with Incoming Dttp
Other atoms:
Mg (4);
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5vzg (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (W434H) Mutant with Incoming Nonhydrolyzable Umpnpp
Other atoms:
Mg (2);
Cl (2);
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5vzh (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (W434H) Mutant with Incoming Utp
Other atoms:
Mg (2);
Cl (2);
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5vzi (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (W434H) Mutant with Incoming Dttp
Other atoms:
Mg (4);
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5w1f (Na: 6) - Crystal Structure of Ni(II)- and Ca(II)-Bound Human Calprotectin
Other atoms:
Ni (6);
Ca (10);
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5w1z (Na: 4) - Crystal Structure of Inosine-Substituted Decamer Duplex Dna (I4)
Other atoms:
Br (4);
Mg (3);
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5w2o (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa
Other atoms:
Cl (1);
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5w2p (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5
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5w2q (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5
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5w2s (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Kmg
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5w3s (Na: 6) - Cryo-Electron Microscopy Structure of A TRPML3 Ion Channel
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5w44 (Na: 1) - Crystal Structure of the Influenza Virus Pa Endonuclease in Complex with Inhibitor 7A (Sri-29770)
Other atoms:
Mg (1);
Mn (1);
Cl (2);
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5w56 (Na: 2) - Structure of Apo Aztc
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5w6h (Na: 1) - Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213)
Other atoms:
K (1);
Zn (1);
Cl (1);
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5w6s (Na: 1) - Crystal Structure of Bacteriophage CBA120 Tailspike Protein 2 Enzymatically Active Domain (TSP2DN, ORF211) Complex with Escherichia Coli O157-Antigen
Other atoms:
K (1);
Cl (3);
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5w6z (Na: 1) - Crystal Structure of the H24W Mutant of HSNUDT16
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5w7w (Na: 1) - Crystal Structure of Fha Domain of Human Aplf
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5w8o (Na: 2) - Homoserine Transacetylase Metx From Mycobacterium Hassiacum
Other atoms:
Ca (4);
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5w8s (Na: 2) - Lipid A Disaccharide Synthase (Lpxb)-7 Solubilizing Mutations
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5w97 (Na: 2) - Crystal Structure of Co-Bound Cytochrome C Oxidase Determined By Serial Femtosecond X-Ray Crystallography at Room Temperature
Other atoms:
Mg (2);
Zn (2);
Fe (4);
Cu (6);
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5wau (Na: 2) - Crystal Structure of Co-Bound Cytochrome C Oxidase Determined By Synchrotron X-Ray Crystallography at 100 K
Other atoms:
Mg (2);
Zn (2);
Fe (4);
Cu (6);
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5wdo (Na: 1) - H-Ras Bound to Gmp-Pnp at 277K
Other atoms:
Mg (2);
Ca (1);
-
5wdq (Na: 1) - H-Ras Mutant L120A Bound to Gmp-Pnp at 100K
Other atoms:
Mg (4);
Ca (2);
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5wdr (Na: 2) - Choanoflagellate Salpingoeca Rosetta Ras with Gmp-Pnp
Other atoms:
Mg (2);
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5wef (Na: 1) - Crystal Structure of the Influenza Virus Pa Endonuclease (F105S Mutant) in Complex with Inhibitor 7A (Sri-29770)
Other atoms:
Mn (2);
Cl (2);
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5wiv (Na: 1) - Structure of the Sodium-Bound Human D4 Dopamine Receptor in Complex with Nemonapride
Other atoms:
Cl (1);
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5wjo (Na: 3) - Crystal Structure of the Unliganded PG90 Tcr
Other atoms:
Cl (9);
Page generated: Wed Nov 13 13:04:05 2024
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