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Sodium in PDB, part 180 (files: 7161-7200), PDB 5vxa-5wiv

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7161-7200 (PDB 5vxa-5wiv).
  1. 5vxa (Na: 1) - Structure of the Human MESH1-Nadph Complex
    Other atoms: Zn (2);
  2. 5vy2 (Na: 1) - Crystal Structure of the F36A Mutant of HSNUDT16
  3. 5vyb (Na: 1) - Structure of the Carbohydrate Recognition Domain of Dectin-2 Complexed with A Mammalian-Type High Mannose MAN9GLCNAC2 Oligosaccharide
    Other atoms: Ca (2);
  4. 5vyl (Na: 1) - Crystal Structure of N-Terminal Half of Herpes Simplex Virus Type 1 UL37 Protein
  5. 5vyq (Na: 4) - Crystal Structure of the N-Formyltransferase RV3404C From Mycobacterium Tuberculosis in Complex with Ydp-QUI4N and Folinic Acid
    Other atoms: K (1); Cl (3);
  6. 5vyy (Na: 1) - Structure of Human HSP90-Alpha Bound to Resorcinylic Inhibitor Bnim
    Other atoms: Mg (1); Cl (1);
  7. 5vz7 (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (G433A) Mutant with Incoming Nonhydrolyzable Umpnpp
    Other atoms: Mg (2); Cl (1);
  8. 5vz8 (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (G433A) Mutant with Incoming Utp
    Other atoms: Mg (2);
  9. 5vz9 (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (G433A) Mutant with Incoming Dttp
    Other atoms: Mg (2); Cl (1);
  10. 5vza (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (G433S) Mutant with Incoming Nonhydrolyzable Umpnpp
    Other atoms: Mg (2);
  11. 5vzb (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (G433S) Mutant with Incoming Utp
    Other atoms: Mg (3); Cl (2);
  12. 5vzc (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (G433S) Mutant with Incoming Dttp
    Other atoms: Mg (2); Cl (1);
  13. 5vzd (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (W434A) Mutant with Incoming Nonhydrolyzable Umpnpp
    Other atoms: Mg (2);
  14. 5vze (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (W434A) Mutant with Incoming Utp
    Other atoms: Mg (3); Cl (1);
  15. 5vzf (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (W434A) Mutant with Incoming Dttp
    Other atoms: Mg (4);
  16. 5vzg (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (W434H) Mutant with Incoming Nonhydrolyzable Umpnpp
    Other atoms: Mg (2); Cl (2);
  17. 5vzh (Na: 1) - Post-Catalytic Complex of Human Polymerase Mu (W434H) Mutant with Incoming Utp
    Other atoms: Mg (2); Cl (2);
  18. 5vzi (Na: 2) - Post-Catalytic Complex of Human Polymerase Mu (W434H) Mutant with Incoming Dttp
    Other atoms: Mg (4);
  19. 5w1f (Na: 6) - Crystal Structure of Ni(II)- and Ca(II)-Bound Human Calprotectin
    Other atoms: Ni (6); Ca (10);
  20. 5w1z (Na: 4) - Crystal Structure of Inosine-Substituted Decamer Duplex Dna (I4)
    Other atoms: Br (4); Mg (3);
  21. 5w2o (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa
    Other atoms: Cl (1);
  22. 5w2p (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5
  23. 5w2q (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5
  24. 5w2s (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Kmg
  25. 5w3s (Na: 6) - Cryo-Electron Microscopy Structure of A TRPML3 Ion Channel
  26. 5w44 (Na: 1) - Crystal Structure of the Influenza Virus Pa Endonuclease in Complex with Inhibitor 7A (Sri-29770)
    Other atoms: Mg (1); Mn (1); Cl (2);
  27. 5w56 (Na: 2) - Structure of Apo Aztc
  28. 5w6h (Na: 1) - Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213)
    Other atoms: K (1); Zn (1); Cl (1);
  29. 5w6s (Na: 1) - Crystal Structure of Bacteriophage CBA120 Tailspike Protein 2 Enzymatically Active Domain (TSP2DN, ORF211) Complex with Escherichia Coli O157-Antigen
    Other atoms: K (1); Cl (3);
  30. 5w6z (Na: 1) - Crystal Structure of the H24W Mutant of HSNUDT16
  31. 5w7w (Na: 1) - Crystal Structure of Fha Domain of Human Aplf
  32. 5w8o (Na: 2) - Homoserine Transacetylase Metx From Mycobacterium Hassiacum
    Other atoms: Ca (4);
  33. 5w8s (Na: 2) - Lipid A Disaccharide Synthase (Lpxb)-7 Solubilizing Mutations
  34. 5w97 (Na: 2) - Crystal Structure of Co-Bound Cytochrome C Oxidase Determined By Serial Femtosecond X-Ray Crystallography at Room Temperature
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  35. 5wau (Na: 2) - Crystal Structure of Co-Bound Cytochrome C Oxidase Determined By Synchrotron X-Ray Crystallography at 100 K
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  36. 5wdo (Na: 1) - H-Ras Bound to Gmp-Pnp at 277K
    Other atoms: Mg (2); Ca (1);
  37. 5wdq (Na: 1) - H-Ras Mutant L120A Bound to Gmp-Pnp at 100K
    Other atoms: Mg (4); Ca (2);
  38. 5wdr (Na: 2) - Choanoflagellate Salpingoeca Rosetta Ras with Gmp-Pnp
    Other atoms: Mg (2);
  39. 5wef (Na: 1) - Crystal Structure of the Influenza Virus Pa Endonuclease (F105S Mutant) in Complex with Inhibitor 7A (Sri-29770)
    Other atoms: Mn (2); Cl (2);
  40. 5wiv (Na: 1) - Structure of the Sodium-Bound Human D4 Dopamine Receptor in Complex with Nemonapride
    Other atoms: Cl (1);
Page generated: Sat Sep 25 14:49:37 2021

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