Sodium in PDB 5w2p: Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5:
2.3.1.41;

The structure of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5, PDB code: 5w2p was solved by G.C.Capodagli, M.B.Neiditch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.22 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.298, 77.298, 145.208, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 18.6

The binding sites of Sodium atom in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5 (pdb code 5w2p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5, PDB code: 5w2p:

Sodium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:32.8 occ:1.00 OD1 A:ASN399 2.4 33.1 1.0 OE1 A:GLU354 2.4 33.9 1.0 OD1 A:ASN309 2.4 31.6 1.0 O A:ALA310 2.5 33.3 1.0 O A:ASN309 2.6 32.5 1.0 O A:ASN400 2.9 31.1 1.0 C A:ALA310 3.1 34.0 1.0 C A:ASN309 3.2 33.4 1.0 CD A:GLU354 3.4 31.2 1.0 CG A:ASN309 3.4 35.4 1.0 CG A:ASN399 3.5 32.7 1.0 CB A:GLU354 3.5 30.4 1.0 N A:HIS311 3.7 31.7 1.0 N A:ALA310 3.8 32.5 1.0 N A:ASN400 3.8 30.5 1.0 CG A:GLU354 3.9 27.2 1.0 CB A:ASN309 3.9 33.8 1.0 CA A:ALA310 4.0 29.7 1.0 C A:ASN400 4.0 31.6 1.0 CA A:HIS311 4.0 32.0 1.0 CA A:ASN309 4.2 34.5 1.0 ND2 A:ASN399 4.3 37.2 1.0 OE2 A:GLU354 4.3 34.4 1.0 O A:HOH704 4.4 36.0 1.0 CA A:ASN400 4.4 28.7 1.0 ND2 A:ASN309 4.5 31.6 1.0 C A:ASN399 4.6 35.6 1.0 CA A:ASN399 4.6 34.9 1.0 CB A:ASN399 4.6 32.8 1.0 CD A:PRO339 4.8 33.2 1.0 CG A:PRO339 4.8 37.9 1.0 CB A:ASN400 4.9 31.4 1.0 CA A:GLU354 4.9 30.8 1.0 C A:HIS311 4.9 37.0 1.0 NZ A:LYS340 5.0 29.6 1.0

P.Kumar, G.C.Capodagli, D.Awasthi, R.Shrestha, K.Maharaja, P.Sukheja, S.G.Li, D.Inoyama, M.Zimmerman, H.P.Ho Liang, J.Sarathy, M.Mina, G.Rasic, R.Russo, A.L.Perryman, T.Richmann, A.Gupta, E.Singleton, S.Verma, S.Husain, P.Soteropoulos, Z.Wang, R.Morris, G.Porter, G.Agnihotri, P.Salgame, S.Ekins, K.Y.Rhee, N.Connell, V.Dartois, M.B.Neiditch, J.S.Freundlich, D.Alland. Synergistic Lethality of A Binary Inhibitor of Mycobacterium Tuberculosis Kasa. Mbio V. 9 2018.
ISSN: ESSN 2150-7511
PubMed: 30563908
DOI: 10.1128/MBIO.02101-17