Atomistry » Sodium » PDB 5vf5-5vz7
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Sodium in PDB, part 179 (files: 7121-7160), PDB 5vf5-5vz7

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7121-7160 (PDB 5vf5-5vz7).
  1. 5vf5 (Na: 1) - Crystal Structure of the Vicilin From Solanum Melongena, Re-Refinement
    Other atoms: Cu (1);
  2. 5vfb (Na: 2) - 1.36 Angstrom Resolution Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Complex with Glycolic Acid.
    Other atoms: Ni (2); Cl (10);
  3. 5vfz (Na: 1) - Integrase From Mycobacterium Phage Brujita
  4. 5vgy (Na: 2) - Identification of A New Zinc Binding Chemotype By Fragment Screening
    Other atoms: Zn (1);
  5. 5vh2 (Na: 4) - Crystal Structure of Mouse Cadherin-23 EC12-13 with Engineered Mutation S1339D
    Other atoms: Ca (10);
  6. 5vhv (Na: 2) - Pseudomonas Fluorescens Alkylpurine Dna Glycosylase Alkc Bound to Dna Containing An Oxocarbenium-Intermediate Analog
  7. 5vi0 (Na: 1) - Pseudomonas Fluorescens Alkylpurine Dna Glycosylase Alkc Bound to Dna Containing An Abasic Site Analog
  8. 5vjd (Na: 4) - Class II Fructose-1,6-Bisphosphate Aldolase of Escherichia Coli with Dhap
    Other atoms: Zn (4);
  9. 5vje (Na: 4) - Class II Fructose-1,6-Bisphosphate Aldolase of Escherichia Coli with D-Glucitol 1,6-Bisphosphate
  10. 5vjf (Na: 2) - Class II Fructose-1,6-Bisphosphate Aldolase of Helicobacter Pylori with Dhap
    Other atoms: Zn (2); Ca (2);
  11. 5vjo (Na: 1) - Complex Between HYHEL10 Fab Fragment Heavy Chain Mutant I29F and Pekin Duck Egg Lysozyme Isoform I (Del-I)
    Other atoms: Cl (4);
  12. 5vlp (Na: 2) - PCSK9 Complex with Ldlr Antagonist Peptide and FAB7G7
  13. 5vm5 (Na: 7) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9, with Ser Bound
  14. 5vm6 (Na: 1) - The Hapten Triclocarban Bound to the Single Domain Camelid Nanobody Vhh T10
    Other atoms: Cl (3);
  15. 5vma (Na: 1) - Structure of B. Pumilus GH48 in Complex with A Cellobio-Derived Isofagomine
    Other atoms: Ca (2);
  16. 5vnr (Na: 1) - X-Ray Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature
    Other atoms: Cl (2);
  17. 5voe (Na: 1) - Desgla-XAS195A Bound to Aptamer 11F7T
    Other atoms: F (19); Mg (2); Ca (1);
  18. 5vof (Na: 1) - Desgla-XAS195A Bound to Aptamer 11F7T and Rivaroxaban
    Other atoms: F (19); Mg (2); Ca (1); Cl (1);
  19. 5voo (Na: 6) - Methionine Synthase Folate-Binding Domain with Methyltetrahydrofolate From Thermus Thermophilus HB8
    Other atoms: Cl (2);
  20. 5vop (Na: 2) - Methionine Synthase Folate-Binding Domain From Thermus Thermophilus HB8 Native
  21. 5vp7 (Na: 2) - Crystal Structure of Human Kras G12A Mutant in Complex with Gdp
    Other atoms: Mg (2);
  22. 5vpa (Na: 1) - Transcription Factor Fosb/Jund Bzip Domain
    Other atoms: Cl (1);
  23. 5vpc (Na: 3) - Transcription Factor Fosb/Jund Bzip Domain in Its Oxidized Form, Type- II Crystal
    Other atoms: Cl (3);
  24. 5vpd (Na: 2) - Transcription Factor Fosb/Jund Bzip Domain in Its Oxidized Form, Type- III Crystal
    Other atoms: Cl (3);
  25. 5vpe (Na: 3) - Transcription Factor Fosb/Jund Bzip Domain in Complex with Cognate Dna, Type-I Crystal
    Other atoms: Cl (1);
  26. 5vpf (Na: 1) - Transcription Factor Fosb/Jund Bzip Domain in Complex with Cognate Dna, Type-II Crystal
    Other atoms: Cl (2);
  27. 5vql (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide
  28. 5vra (Na: 1) - 2.35-Angstrom in Situ Mylar Structure of Human A2A Adenosine Receptor at 100 K
  29. 5vrz (Na: 1) - Human Dna Polymerase Beta 8-Oxog:Dc Extension with Dttp After 60 S
    Other atoms: Mg (5); Cl (2);
  30. 5vs2 (Na: 2) - Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
    Other atoms: Ca (3);
  31. 5vs3 (Na: 1) - Human Dna Polymerase Beta 8-Oxog:Da Extension with Dttp After 90 S
    Other atoms: Mg (6);
  32. 5vu0 (Na: 9) - Crystal Structure of the Complex Between Afucosylated/Galactosylated Human IGG1 Fc and Fc Gamma Receptor Iiia (CD16A) with MAN5 N-Glycans
  33. 5vwn (Na: 1) - Triosephosphate Isomerases Deletion Loop 3 From Trichomonas Vaginalis
  34. 5vxa (Na: 1) - Structure of the Human MESH1-Nadph Complex
    Other atoms: Zn (2);
  35. 5vy2 (Na: 1) - Crystal Structure of the F36A Mutant of HSNUDT16
  36. 5vyb (Na: 1) - Structure of the Carbohydrate Recognition Domain of Dectin-2 Complexed with A Mammalian-Type High Mannose MAN9GLCNAC2 Oligosaccharide
    Other atoms: Ca (2);
  37. 5vyl (Na: 1) - Crystal Structure of N-Terminal Half of Herpes Simplex Virus Type 1 UL37 Protein
  38. 5vyq (Na: 4) - Crystal Structure of the N-Formyltransferase RV3404C From Mycobacterium Tuberculosis in Complex with Ydp-QUI4N and Folinic Acid
    Other atoms: K (1); Cl (3);
  39. 5vyy (Na: 1) - Structure of Human HSP90-Alpha Bound to Resorcinylic Inhibitor Bnim
    Other atoms: Mg (1); Cl (1);
  40. 5vz7 (Na: 1) - Pre-Catalytic Ternary Complex of Human Polymerase Mu (G433A) Mutant with Incoming Nonhydrolyzable Umpnpp
    Other atoms: Mg (2); Cl (1);
Page generated: Wed Nov 4 05:35:54 2020

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