Sodium in PDB, part 179 (files: 7121-7160),
PDB 5vbx-5vxa
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7121-7160 (PDB 5vbx-5vxa).
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5vbx (Na: 9) - Crystal Structure of Holo-[Acyl-Carrier-Protein] Synthase (Acps) From Escherichia Coli
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5vcl (Na: 6) - Structure of the Qdm Peptide Bound to Qa-1A
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5ve2 (Na: 12) - Crystal Structure of Enoyl-Coa Hydratase/Isomerase From Pseudoalteromonas Atlantica T6C at 2.3 A Resolution.
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5veg (Na: 6) - Structure of A Short-Chain Flavodoxin Associated with A Non-Canonical Pdu Bacterial Microcompartment
Other atoms:
Cd (3);
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5vev (Na: 2) - Crystal Structure of Phosphoribosylamine-Glycine Ligase From Neisseria Gonorrhoeae
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5vez (Na: 3) - Dna Polymerase Beta Substrate Complex with 8-Oxog:A at the Primer Terminus and Incoming Dctp Analog
Other atoms:
Mg (1);
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5vf5 (Na: 1) - Crystal Structure of the Vicilin From Solanum Melongena, Re-Refinement
Other atoms:
Cu (1);
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5vfb (Na: 2) - 1.36 Angstrom Resolution Crystal Structure of Malate Synthase G From Pseudomonas Aeruginosa in Complex with Glycolic Acid.
Other atoms:
Ni (2);
Cl (10);
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5vfz (Na: 1) - Integrase From Mycobacterium Phage Brujita
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5vgy (Na: 2) - Identification of A New Zinc Binding Chemotype By Fragment Screening
Other atoms:
Zn (1);
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5vh2 (Na: 4) - Crystal Structure of Mouse Cadherin-23 EC12-13 with Engineered Mutation S1339D
Other atoms:
Ca (10);
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5vhv (Na: 2) - Pseudomonas Fluorescens Alkylpurine Dna Glycosylase Alkc Bound to Dna Containing An Oxocarbenium-Intermediate Analog
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5vi0 (Na: 1) - Pseudomonas Fluorescens Alkylpurine Dna Glycosylase Alkc Bound to Dna Containing An Abasic Site Analog
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5vjd (Na: 4) - Class II Fructose-1,6-Bisphosphate Aldolase of Escherichia Coli with Dhap
Other atoms:
Zn (4);
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5vje (Na: 4) - Class II Fructose-1,6-Bisphosphate Aldolase of Escherichia Coli with D-Glucitol 1,6-Bisphosphate
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5vjf (Na: 2) - Class II Fructose-1,6-Bisphosphate Aldolase of Helicobacter Pylori with Dhap
Other atoms:
Zn (2);
Ca (2);
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5vjo (Na: 1) - Complex Between HYHEL10 Fab Fragment Heavy Chain Mutant I29F and Pekin Duck Egg Lysozyme Isoform I (Del-I)
Other atoms:
Cl (4);
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5vlp (Na: 2) - PCSK9 Complex with Ldlr Antagonist Peptide and FAB7G7
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5vm5 (Na: 7) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9, with Ser Bound
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5vm6 (Na: 1) - The Hapten Triclocarban Bound to the Single Domain Camelid Nanobody Vhh T10
Other atoms:
Cl (3);
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5vma (Na: 1) - Structure of B. Pumilus GH48 in Complex with A Cellobio-Derived Isofagomine
Other atoms:
Ca (2);
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5vnr (Na: 1) - X-Ray Strucutre of Perdeuterated T4 Lysozyme Cysteine-Free Pseudo-Wild Type at Cryogenic Temperature
Other atoms:
Cl (2);
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5voe (Na: 1) - Desgla-XAS195A Bound to Aptamer 11F7T
Other atoms:
F (19);
Mg (2);
Ca (1);
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5vof (Na: 1) - Desgla-XAS195A Bound to Aptamer 11F7T and Rivaroxaban
Other atoms:
F (19);
Mg (2);
Ca (1);
Cl (1);
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5voo (Na: 6) - Methionine Synthase Folate-Binding Domain with Methyltetrahydrofolate From Thermus Thermophilus HB8
Other atoms:
Cl (2);
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5vop (Na: 2) - Methionine Synthase Folate-Binding Domain From Thermus Thermophilus HB8 Native
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5vp7 (Na: 2) - Crystal Structure of Human Kras G12A Mutant in Complex with Gdp
Other atoms:
Mg (2);
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5vpa (Na: 1) - Transcription Factor Fosb/Jund Bzip Domain
Other atoms:
Cl (1);
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5vpc (Na: 3) - Transcription Factor Fosb/Jund Bzip Domain in Its Oxidized Form, Type- II Crystal
Other atoms:
Cl (3);
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5vpd (Na: 2) - Transcription Factor Fosb/Jund Bzip Domain in Its Oxidized Form, Type- III Crystal
Other atoms:
Cl (3);
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5vpe (Na: 3) - Transcription Factor Fosb/Jund Bzip Domain in Complex with Cognate Dna, Type-I Crystal
Other atoms:
Cl (1);
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5vpf (Na: 1) - Transcription Factor Fosb/Jund Bzip Domain in Complex with Cognate Dna, Type-II Crystal
Other atoms:
Cl (2);
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5vql (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide
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5vra (Na: 1) - 2.35-Angstrom in Situ Mylar Structure of Human A2A Adenosine Receptor at 100 K
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5vrz (Na: 1) - Human Dna Polymerase Beta 8-Oxog:Dc Extension with Dttp After 60 S
Other atoms:
Mg (5);
Cl (2);
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5vs2 (Na: 2) - Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
Other atoms:
Ca (3);
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5vs3 (Na: 1) - Human Dna Polymerase Beta 8-Oxog:Da Extension with Dttp After 90 S
Other atoms:
Mg (6);
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5vu0 (Na: 9) - Crystal Structure of the Complex Between Afucosylated/Galactosylated Human IGG1 Fc and Fc Gamma Receptor Iiia (CD16A) with MAN5 N-Glycans
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5vwn (Na: 1) - Triosephosphate Isomerases Deletion Loop 3 From Trichomonas Vaginalis
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5vxa (Na: 1) - Structure of the Human MESH1-Nadph Complex
Other atoms:
Zn (2);
Page generated: Wed Nov 13 13:04:03 2024
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