Sodium in PDB 6z8w: X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3.
Enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3.
All present enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3.:
3.4.21.5;
3.4.21.5;
Protein crystallography data
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8w
was solved by
R.Troisi,
E.N.Timofeev,
F.Sica,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 82.10 / 1.73 |
| Space group | P 32 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 94.798, 94.798, 125.326, 90, 90, 120 |
| R / Rfree (%) | 17.8 / 20.7 |
Other elements in 6z8w:
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3. also contains other interesting chemical elements:
| Potassium | (K) | 1 atom |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3.
(pdb code 6z8w). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8w:
In total only one binding site of Sodium was determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8w:
Sodium binding site 1 out of 1 in 6z8w
Go back to
Sodium Binding Sites List in 6z8w
Sodium binding site 1 out
of 1 in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3G), Which Contains 1-Beta-D- Glucopyranosyl Residue in the Side Chain of THY3 at N3. within 5.0Å range:
|
Reference:
I.Smirnov,
N.Kolganova,
R.Troisi,
F.Sica,
E.Timofeev.
Expanding the Recognition Interface of the Thrombin Binding Aptamer HD1 Through Modification of Residues T3 and T12 Mol.Ther. 2021.
ISSN: ESSN 1525-0024
DOI: 10.1016/J.OMTN.2021.01.004
Page generated: Wed Mar 3 15:32:11 2021
ISSN: ESSN 1525-0024
DOI: 10.1016/J.OMTN.2021.01.004
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