Sodium in PDB 6r7k: Ligand Complex of Rorg Lbd

Protein crystallography data

The structure of Ligand Complex of Rorg Lbd, PDB code: 6r7k was solved by Y.Xue, A.Aagaard, F.Narjes, S.Von Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.81 / 1.54
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.790, 61.790, 159.170, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 21.4

Other elements in 6r7k:

The structure of Ligand Complex of Rorg Lbd also contains other interesting chemical elements:

Fluorine (F) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Ligand Complex of Rorg Lbd (pdb code 6r7k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ligand Complex of Rorg Lbd, PDB code: 6r7k:

Sodium binding site 1 out of 1 in 6r7k

Go back to Sodium Binding Sites List in 6r7k
Sodium binding site 1 out of 1 in the Ligand Complex of Rorg Lbd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ligand Complex of Rorg Lbd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na602

b:33.8
occ:1.00
O A:CYS366 2.3 25.3 1.0
O A:TYR369 2.4 27.5 1.0
OG A:SER408 2.6 35.2 1.0
O A:HOH848 2.7 40.4 1.0
O A:HOH772 2.8 37.8 1.0
O A:HOH931 3.0 60.2 1.0
C A:CYS366 3.5 24.7 1.0
C A:TYR369 3.5 27.7 1.0
CB A:SER408 3.6 29.1 1.0
NH2 A:ARG296 3.7 33.2 1.0
N A:TYR369 4.1 23.9 1.0
CA A:TYR369 4.2 23.2 1.0
CB A:TYR369 4.2 22.5 1.0
CA A:SER408 4.3 27.0 1.0
CD2 A:TYR369 4.4 23.7 1.0
O A:HOH761 4.4 42.0 1.0
N A:ARG367 4.4 22.0 1.0
CA A:CYS366 4.4 22.8 1.0
CA A:ARG367 4.4 22.3 1.0
C A:ARG367 4.4 26.7 1.0
O A:HOH964 4.5 41.5 1.0
O A:ARG367 4.5 27.1 1.0
N A:ASN370 4.6 25.2 1.0
CB A:CYS366 4.6 23.8 1.0
CG A:TYR369 4.8 22.9 1.0
O A:HOH966 4.9 63.5 1.0
CA A:ASN370 4.9 24.0 1.0
O A:HOH795 4.9 34.0 1.0
N A:ALA371 4.9 28.3 1.0
CZ A:ARG296 5.0 53.6 1.0

Reference:

S.Von Berg, Y.Xue, M.Collins, A.Llinas, R.I.Olsson, T.Halvarsson, M.Lindskog, J.Malmberg, J.Jirholt, N.Krutrok, M.Ramnegard, M.Brannstrom, A.Lundqvist, M.Lepisto, A.Aagaard, J.Mcpheat, E.L.Hansson, R.Chen, Y.Xiong, T.G.Hansson, F.Narjes. Discovery of Potent and Orally Bioavailable Inverse Agonists of the Retinoic Acid Receptor-Related Orphan Receptor C2. Acs Med.Chem.Lett. V. 10 972 2019.
ISSN: ISSN 1948-5875
PubMed: 31223457
DOI: 10.1021/ACSMEDCHEMLETT.9B00158
Page generated: Tue Dec 15 12:51:53 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy