Sodium in PDB 6r6d: [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2

The structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2, PDB code: 6r6d was solved by K.T.Mcquaid, J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.03 / 1.84
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	46.704, 46.704, 34.308, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 18.7

The structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 also contains other interesting chemical elements:

Ruthenium	(Ru)	1 atom
Barium	(Ba)	1 atom

The binding sites of Sodium atom in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 (pdb code 6r6d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2, PDB code: 6r6d:

Sodium binding site 1 out of 1 in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na103 b:36.3 occ:1.00 O A:HOH210 3.1 57.2 1.0 N4 A:DC5 3.4 40.4 1.0 O A:HOH208 3.4 39.0 1.0 C8 A:DG4 3.5 40.8 1.0 C5 A:DC5 3.7 39.2 1.0 C2' A:DG4 3.8 41.4 1.0 N7 A:DG4 3.8 35.0 1.0 N9 A:DG4 4.0 37.2 1.0 C4 A:DC5 4.0 38.9 1.0 C1' A:DG4 4.5 35.6 1.0 C5 A:DG4 4.5 34.1 1.0 C4 A:DG4 4.6 35.9 1.0 O6 A:DG6 4.9 39.9 1.0 O A:HOH203 4.9 41.2 1.0 O A:HOH211 4.9 44.4 1.0 C6 A:DC5 5.0 38.6 1.0

K.T.Mcquaid, J.P.Hall, C.J.Cardin. Structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 To Be Published.