Sodium in PDB 6r6a: Major Aspartyl Peptidase 1 From C. Neoformans

The structure of Major Aspartyl Peptidase 1 From C. Neoformans, PDB code: 6r6a was solved by R.Krystufek, P.Sacha, J.Brynda, J.Konvalinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	73.66 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	97.36, 112.641, 91.031, 90, 90, 90
R / Rfree (%)	17.7 / 20.7

The binding sites of Sodium atom in the Major Aspartyl Peptidase 1 From C. Neoformans (pdb code 6r6a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Major Aspartyl Peptidase 1 From C. Neoformans, PDB code: 6r6a:

Sodium binding site 1 out of 1 in the Major Aspartyl Peptidase 1 From C. Neoformans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Major Aspartyl Peptidase 1 From C. Neoformans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na413 b:52.9 occ:1.00 OH4 A:1PE414 3.1 35.0 1.0 OH3 A:1PE414 3.2 43.1 1.0 OH5 A:1PE414 3.4 33.8 1.0 C14 A:1PE414 3.8 35.7 1.0 C22 A:1PE414 3.8 46.0 1.0 C25 A:1PE414 3.9 35.1 1.0 C23 A:1PE414 3.9 40.3 1.0 C12 A:1PE414 4.0 46.9 1.0 C24 A:1PE414 4.0 34.5 1.0 CB A:ASP34 4.0 20.9 1.0 C13 A:1PE414 4.1 40.8 1.0 C15 A:1PE414 4.2 32.0 1.0 C2 A:PGE403 4.2 54.4 1.0 O2 A:PGE403 4.3 52.7 1.0 OD2 A:ASP34 4.5 23.7 1.0 CG A:ASP34 4.5 21.4 1.0 OH2 A:1PE414 4.6 49.5 1.0 C3 A:PGE403 4.8 57.6 1.0

R.Krystufek, P.Sacha, J.Brynda, J.Konvalinka. Major Aspartyl Peptidase 1 From C. Neoformans To Be Published.