Sodium in PDB 6r1j: Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila.

The structure of Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila., PDB code: 6r1j was solved by A.M.Churchill-Angus, J.S.Wilson, P.J.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.68 / 1.92
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	88.538, 88.538, 290.975, 90.00, 90.00, 120.00
R / Rfree (%)	23.4 / 27.8

The binding sites of Sodium atom in the Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila. (pdb code 6r1j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila., PDB code: 6r1j:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila. within 5.0Å range: probe atom residue distance (Å) B Occ J:Na301 b:52.4 occ:1.00 OD2 J:ASP264 2.4 39.4 1.0 OG1 J:THR224 2.8 30.4 1.0 CB J:ASP264 3.1 44.0 1.0 CG J:ASP264 3.1 45.0 1.0 CB J:THR224 3.4 33.3 1.0 CA J:VAL221 3.8 31.9 1.0 O J:LYS220 3.8 34.2 1.0 O J:THR260 3.9 34.9 1.0 CG2 J:THR260 3.9 36.0 1.0 CG2 J:THR224 3.9 33.3 1.0 CA J:LEU261 4.0 33.5 1.0 C J:LYS220 4.0 30.5 1.0 N J:VAL221 4.0 33.8 1.0 CD2 J:LEU261 4.1 38.3 1.0 CG2 J:VAL221 4.1 34.7 1.0 C J:THR260 4.1 27.8 1.0 NZ J:LYS220 4.2 49.6 1.0 N J:LEU261 4.2 32.3 1.0 CG J:LYS220 4.3 40.9 1.0 OD1 J:ASP264 4.3 51.6 1.0 CA J:ASP264 4.5 42.5 1.0 CB J:VAL221 4.5 33.5 1.0 O J:VAL221 4.7 32.0 1.0 C J:VAL221 4.7 36.7 1.0 CB J:THR260 4.8 34.3 1.0 CA J:THR224 4.8 35.1 1.0 CG J:LEU261 4.8 35.9 1.0 CB J:LYS220 4.9 36.1 1.0 CD J:LYS220 4.9 46.7 1.0 N J:ASP264 4.9 39.9 1.0 C J:LEU261 4.9 39.1 1.0 CB J:LEU261 4.9 34.1 1.0 N J:THR224 5.0 38.1 1.0

Sodium binding site 2 out of 2 in the Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Soluble Ahlc Triple Head Mutant of the Tripartite Alpha-Pore Forming Toxin, Ahl, From Aeromonas Hydrophila. within 5.0Å range: probe atom residue distance (Å) B Occ J:Na302 b:62.3 occ:1.00 OE2 J:GLU17 2.4 42.4 1.0 O J:HOH464 3.0 54.9 1.0 O J:HOH419 3.0 47.4 1.0 CD J:GLU17 3.3 46.0 1.0 OE1 J:GLU17 3.4 42.7 1.0 CG J:GLN21 4.2 38.1 1.0 NE2 J:GLN21 4.2 35.6 1.0 CA J:GLY38 4.3 33.7 1.0 CD J:GLN21 4.5 39.4 1.0 CG J:GLU17 4.7 39.7 1.0 O J:GLY38 4.8 40.0 1.0 O J:HOH516 4.9 55.9 1.0

J.S.Wilson, A.M.Churchill-Angus, S.P.Davies, S.E.Sedelnikova, S.B.Tzokov, J.B.Rafferty, P.A.Bullough, C.Bisson, P.J.Baker. Identification and Structural Analysis of the Tripartite Alpha-Pore Forming Toxin of Aeromonas Hydrophila. Nat Commun V. 10 2900 2019.
ISSN: ESSN 2041-1723
PubMed: 31263098
DOI: 10.1038/S41467-019-10777-X