Sodium in PDB 6qwu: 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa.

The structure of 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa., PDB code: 6qwu was solved by M.C.Nguyen, L.Mourey, J.D.Pedelacq, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.38 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.652, 61.918, 66.699, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 18.4

The structure of 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa. also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Sodium atom in the 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa. (pdb code 6qwu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa., PDB code: 6qwu:

Sodium binding site 1 out of 1 in the 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 4'-Phosphopantetheinyl Transferase Pptab From Mycobacterium Abscessus at pH 5.5 with MN2+ and Coa. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:28.6 occ:1.00 O A:ALA164 2.8 19.4 1.0 O A:HOH413 2.9 29.4 1.0 HZ A:PHE160 3.2 23.3 1.0 HG3 A:LYS75 3.3 30.3 1.0 HE3 A:LYS75 3.5 35.2 1.0 HE1 A:PHE160 3.5 22.7 1.0 HE2 A:LYS75 3.7 35.2 1.0 C A:ALA164 3.7 16.6 1.0 HB1 A:ALA164 3.7 23.9 1.0 HA A:ARG165 3.9 23.6 1.0 CZ A:PHE160 3.9 19.4 1.0 HG2 A:LYS75 3.9 30.3 1.0 CE A:LYS75 4.0 29.4 1.0 CE1 A:PHE160 4.0 18.9 1.0 CG A:LYS75 4.0 25.3 1.0 O A:HOH559 4.3 22.2 1.0 HA A:ALA164 4.3 24.1 1.0 OD2 A:ASP74 4.4 41.9 1.0 CA A:ALA164 4.5 20.1 1.0 CB A:ALA164 4.5 19.9 1.0 N A:ARG165 4.5 17.9 1.0 CA A:ARG165 4.6 19.7 1.0 CD A:LYS75 4.6 26.3 1.0 O A:HOH590 4.8 36.9 1.0 H A:TRP166 4.9 20.6 1.0 HB3 A:ALA164 4.9 23.9 1.0 O A:HOH553 4.9 19.5 1.0 O A:HOH411 5.0 43.1 1.0

M.C.Nguyen, O.Saurel, C.Carivenc, S.Gavalda, S.Saitta, M.P.Tran, A.Milon, C.Chalut, C.Guilhot, L.Mourey, J.D.Pedelacq. Conformational Flexibility of Coenzyme A and Its Impact on the Post-Translational Modification of Acyl Carrier Proteins By 4'-Phosphopantetheinyl Transferases. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 32128972
DOI: 10.1111/FEBS.15273