Sodium in PDB 6nfx: MBTD1 Mbt Repeats

The structure of MBTD1 Mbt Repeats, PDB code: 6nfx was solved by H.Zhang, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.60 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	68.607, 124.724, 70.057, 90.00, 92.88, 90.00
R / Rfree (%)	18.5 / 22.1

The binding sites of Sodium atom in the MBTD1 Mbt Repeats (pdb code 6nfx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the MBTD1 Mbt Repeats, PDB code: 6nfx:

Sodium binding site 1 out of 1 in the MBTD1 Mbt Repeats


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of MBTD1 Mbt Repeats within 5.0Å range: probe atom residue distance (Å) B Occ A:Na739 b:33.1 occ:1.00 O A:HOH887 2.2 36.2 1.0 OD2 A:ASP324 2.3 35.8 1.0 O A:THR326 2.3 33.1 1.0 O A:ASP327 2.3 30.5 1.0 OD1 A:ASP328 2.7 32.1 1.0 C A:ASP327 3.0 34.5 1.0 CG A:ASP324 3.2 36.9 1.0 C A:THR326 3.5 35.2 1.0 OD1 A:ASP324 3.5 39.0 1.0 N A:ASP328 3.6 32.4 1.0 CA A:ASP328 3.8 33.1 1.0 CA A:ASP327 3.8 33.4 1.0 CG A:ASP328 3.9 34.0 1.0 CB A:ASP327 4.0 31.8 1.0 N A:ASP327 4.1 34.5 1.0 CB A:ASP328 4.5 32.2 1.0 CB A:ASP324 4.6 33.4 1.0 CG A:ASP327 4.7 37.9 1.0 N A:THR326 4.7 29.5 1.0 CA A:THR326 4.7 30.3 1.0 OD2 A:ASP327 4.9 37.8 1.0 OD2 A:ASP328 5.0 31.1 1.0

H.Zhang, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min. MBTD1 Mbt Repeats To Be Published.