Sodium in PDB 6nbp: Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis

The structure of Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis, PDB code: 6nbp was solved by D.L.Hofmeister, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.70
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.928, 75.928, 87.591, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 22.6

The binding sites of Sodium atom in the Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis (pdb code 6nbp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis, PDB code: 6nbp:

Sodium binding site 1 out of 1 in the Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:42.2 occ:1.00 O A:ILE151 2.7 21.7 1.0 O A:THR192 3.0 31.0 1.0 O A:HOH539 3.2 35.8 0.5 C A:ILE151 3.7 24.2 1.0 O A:HOH408 3.8 35.7 1.0 CB A:TYR191 4.0 29.7 1.0 CG2 A:ILE151 4.1 24.9 1.0 CA A:ILE151 4.1 22.4 1.0 C A:THR192 4.1 31.7 1.0 N A:THR192 4.3 29.9 1.0 O A:HOH593 4.5 41.2 0.5 CA A:TYR191 4.7 28.7 1.0 CB A:ILE151 4.7 23.4 1.0 OD1 A:ASN182 4.8 23.4 1.0 CA A:THR192 4.8 34.1 1.0 N A:ASP152 4.9 20.4 1.0 C A:TYR191 4.9 32.7 1.0

D.L.Hofmeister, J.B.Thoden, H.M.Holden. Investigation of A Sugar N-Formyltransferase From the Plant Pathogen Pantoea Ananatis. Protein Sci. V. 28 707 2019.
ISSN: ESSN 1469-896X
PubMed: 30666752
DOI: 10.1002/PRO.3577