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Sodium in PDB 6n91: Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin)

Enzymatic activity of Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin)

All present enzymatic activity of Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin):
3.5.4.4;

Protein crystallography data

The structure of Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin), PDB code: 6n91 was solved by N.Maltseva, Y.Kim, M.Endres, L.Welk, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.91 / 2.05
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 134.906, 134.906, 136.144, 90.00, 90.00, 120.00
R / Rfree (%) 15.4 / 17.4

Other elements in 6n91:

The structure of Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin) (pdb code 6n91). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin), PDB code: 6n91:

Sodium binding site 1 out of 1 in 6n91

Go back to Sodium Binding Sites List in 6n91
Sodium binding site 1 out of 1 in the Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na405

b:62.2
occ:1.00
 O A:HOH542 2.4 37.5 1.0
OE1 B:GLN48 2.5 52.5 1.0
O B:HOH613 2.5 40.0 1.0
O B:ILE49 2.5 31.2 1.0
O A:HOH579 2.5 31.6 1.0
NE2 A:GLN48 2.9 51.4 1.0
CD B:GLN48 3.2 49.0 1.0
CG B:GLN48 3.3 38.8 1.0
O B:HOH502 3.3 30.1 1.0
C B:ILE49 3.6 33.3 1.0
CB B:GLN48 4.0 28.5 1.0
CD A:GLN48 4.1 48.9 1.0
O A:ILE49 4.3 32.2 1.0
N B:ILE49 4.3 35.2 1.0
C B:GLN48 4.3 39.5 1.0
O B:HOH617 4.4 31.5 1.0
CA B:VAL50 4.4 30.3 1.0
N B:VAL50 4.5 33.3 1.0
NE2 B:GLN48 4.5 55.2 1.0
O B:GLN48 4.5 38.6 1.0
CA B:ILE49 4.6 33.1 1.0
CA A:GLY284 4.7 29.9 1.0
CG A:GLN48 4.7 47.0 1.0
O A:GLU283 4.7 30.7 1.0
CA B:GLN48 4.8 28.7 1.0
O B:GLU283 4.8 30.9 1.0
O B:VAL50 4.9 44.8 1.0
O A:GLY284 4.9 30.3 1.0
OE1 A:GLN48 4.9 59.8 1.0
CA B:GLY284 5.0 27.4 1.0

Reference:

N.Maltseva, Y.Kim, M.Endres, L.Welk, A.Joachimiak. Crystal Structure of Adenosine Deaminase From Vibrio Cholerae Complexed with Pentostatin (Deoxycoformycin) (Casp Target) To Be Published.
Page generated: Tue Dec 15 12:38:15 2020

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