Sodium in PDB 6k89: The Closed State of RGLG1 Vwa Domain

All present enzymatic activity of The Closed State of RGLG1 Vwa Domain:
2.3.2.27;

The structure of The Closed State of RGLG1 Vwa Domain, PDB code: 6k89 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.04 / 1.69
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.619, 72.935, 80.077, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 23.1

The structure of The Closed State of RGLG1 Vwa Domain also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the The Closed State of RGLG1 Vwa Domain (pdb code 6k89). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Closed State of RGLG1 Vwa Domain, PDB code: 6k89:

Sodium binding site 1 out of 1 in the The Closed State of RGLG1 Vwa Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Closed State of RGLG1 Vwa Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:31.3 occ:1.00 OD1 B:ASP207 2.3 24.8 1.0 OD1 B:ASN156 2.3 27.6 1.0 O B:HOH732 2.4 31.2 1.0 OD1 B:ASP205 2.5 28.9 1.0 O B:HOH624 2.6 27.6 1.0 O B:HOH711 2.9 28.2 1.0 CG B:ASP207 3.2 29.1 1.0 CG B:ASN156 3.3 26.0 1.0 O B:LEU209 3.3 26.5 1.0 CG B:ASP205 3.4 28.7 1.0 OD2 B:ASP207 3.6 28.6 1.0 CB B:ASN156 3.7 23.4 1.0 OD2 B:ASP205 3.7 28.4 1.0 N B:LEU209 3.9 25.0 1.0 CA B:ASN156 4.1 20.5 1.0 O B:HOH678 4.2 26.3 1.0 C B:LEU209 4.3 26.4 1.0 O B:HOH736 4.3 33.1 1.0 N B:ASP207 4.3 26.5 1.0 N B:ASN208 4.4 26.6 1.0 CA B:LEU209 4.5 25.0 1.0 ND2 B:ASN156 4.5 22.5 1.0 CB B:ASP207 4.5 26.4 1.0 CB B:LEU209 4.6 25.7 1.0 CB B:ASP205 4.7 26.3 1.0 CA B:ASP207 4.8 27.5 1.0 C B:ASP207 4.8 27.1 1.0 C B:ASN208 4.8 28.8 1.0 CA B:ASP205 4.8 25.9 1.0 N B:GLU206 4.9 25.4 1.0 O B:HOH759 4.9 35.4 1.0 N B:LEU157 4.9 20.1 1.0 O B:SER155 4.9 25.3 1.0 CA B:ASN208 5.0 27.1 1.0 C B:ASP205 5.0 27.8 1.0

Q.Wang, Y.Wu. The Closed State of RGLG1 Vwa Domain To Be Published.