Sodium in PDB 6k86: The Closed State of RGLG1 Mutant-E378A

All present enzymatic activity of The Closed State of RGLG1 Mutant-E378A:
2.3.2.27;

The structure of The Closed State of RGLG1 Mutant-E378A, PDB code: 6k86 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.39 / 1.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.589, 72.555, 80.848, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 23.3

The structure of The Closed State of RGLG1 Mutant-E378A also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the The Closed State of RGLG1 Mutant-E378A (pdb code 6k86). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Closed State of RGLG1 Mutant-E378A, PDB code: 6k86:

Sodium binding site 1 out of 1 in the The Closed State of RGLG1 Mutant-E378A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Closed State of RGLG1 Mutant-E378A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:39.7 occ:1.00 OD1 B:ASP207 2.2 33.4 1.0 OD1 B:ASN156 2.3 32.8 1.0 O B:HOH611 2.3 38.2 1.0 OD1 B:ASP205 2.4 37.4 1.0 O B:HOH644 2.5 36.0 1.0 O B:HOH690 3.0 36.9 1.0 CG B:ASP207 3.1 36.8 1.0 CG B:ASN156 3.3 35.2 1.0 O B:LEU209 3.4 37.9 1.0 CG B:ASP205 3.4 35.8 1.0 OD2 B:ASP207 3.5 37.6 1.0 OD2 B:ASP205 3.7 40.8 1.0 CB B:ASN156 3.7 30.5 1.0 CA B:ASN156 4.0 30.4 1.0 N B:LEU209 4.1 32.9 1.0 O B:HOH717 4.1 38.7 1.0 O B:HOH642 4.3 34.4 1.0 C B:LEU209 4.3 35.6 1.0 N B:ASN208 4.4 34.5 1.0 N B:ASP207 4.4 35.0 1.0 CB B:ASP207 4.5 36.4 1.0 ND2 B:ASN156 4.5 32.4 1.0 CA B:LEU209 4.6 33.9 1.0 O B:HOH742 4.7 39.9 1.0 CB B:ASP205 4.7 34.7 1.0 CA B:ASP207 4.8 36.5 1.0 CB B:LEU209 4.8 34.3 1.0 C B:ASP207 4.8 36.7 1.0 O B:SER155 4.8 35.6 1.0 N B:LEU157 4.8 29.6 1.0 N B:GLU206 4.8 34.7 1.0 CA B:ASP205 4.9 34.7 1.0 C B:ASN208 4.9 35.8 1.0

Q.Wang, Y.Wu. The Closed State of RGLG1 Mutant-E378A To Be Published.