Sodium in PDB 6k82: RGLG1 Mutant-D338A E378A

All present enzymatic activity of RGLG1 Mutant-D338A E378A:
2.3.2.27;

The structure of RGLG1 Mutant-D338A E378A, PDB code: 6k82 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.14 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.454, 73.327, 82.280, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 22.1

The structure of RGLG1 Mutant-D338A E378A also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the RGLG1 Mutant-D338A E378A (pdb code 6k82). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the RGLG1 Mutant-D338A E378A, PDB code: 6k82:

Sodium binding site 1 out of 1 in the RGLG1 Mutant-D338A E378A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of RGLG1 Mutant-D338A E378A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:24.0 occ:1.00 OD1 B:ASN156 2.2 22.1 1.0 OD1 B:ASP207 2.3 21.0 1.0 OD1 B:ASP205 2.3 26.5 1.0 O B:HOH694 2.5 25.6 1.0 O B:HOH735 2.5 21.8 1.0 O B:HOH621 2.6 26.2 1.0 CG B:ASP207 3.1 23.1 1.0 CG B:ASN156 3.3 20.5 1.0 OD2 B:ASP207 3.3 24.6 1.0 CG B:ASP205 3.4 24.1 1.0 CB B:ASN156 3.7 17.8 1.0 O B:LEU209 3.8 22.7 1.0 O B:HOH716 3.9 24.4 1.0 OD2 B:ASP205 3.9 25.2 1.0 O B:HOH663 4.0 21.8 1.0 CA B:ASN156 4.1 19.0 1.0 O B:HOH713 4.3 27.0 1.0 N B:ASP207 4.3 19.8 1.0 N B:LEU209 4.3 19.5 1.0 CB B:ASP207 4.4 20.3 1.0 ND2 B:ASN156 4.5 19.2 1.0 N B:ASN208 4.6 20.6 1.0 CB B:ASP205 4.7 22.8 1.0 CB B:LEU209 4.7 19.6 1.0 C B:LEU209 4.7 21.2 1.0 CA B:ASP207 4.7 21.4 1.0 N B:GLU206 4.8 20.3 1.0 CA B:ASP205 4.8 22.0 1.0 CA B:LEU209 4.8 20.6 1.0 C B:ASP205 4.8 25.2 1.0 O B:SER155 4.9 26.1 1.0 C B:ASP207 4.9 20.1 1.0

Q.Wang, Y.Wu. RGLG1 Mutant-D338A E378A To Be Published.