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Sodium in PDB 6k5q: Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia

Enzymatic activity of Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia

All present enzymatic activity of Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia, PDB code: 6k5q was solved by B.Kanal Elamparithi, T.Ankur, M.Sivakumar, K.Gunasekaran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.55 / 1.18
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.074, 77.074, 38.654, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia (pdb code 6k5q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia, PDB code: 6k5q:

Sodium binding site 1 out of 1 in 6k5q

Go back to Sodium Binding Sites List in 6k5q
Sodium binding site 1 out of 1 in the Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:22.5
occ:1.00
 O4 A:D2L204 2.7 25.4 0.8
O A:HOH507 2.9 26.9 1.0
N A:ASP48 2.9 16.8 1.0
OG1 A:THR47 2.9 25.9 1.0
CG A:ASP48 3.2 15.8 1.0
OD1 A:ASP48 3.3 15.0 1.0
CB A:ASP48 3.4 16.9 1.0
N A:THR47 3.4 16.1 1.0
S1 A:D2L204 3.6 19.7 0.8
O3 A:D2L204 3.6 20.9 0.8
CB A:ASN46 3.7 13.5 1.0
CA A:ASP48 3.7 17.1 1.0
OD2 A:ASP48 3.7 17.1 1.0
C A:THR47 3.8 18.8 1.0
CA A:THR47 3.9 18.7 1.0
CB A:THR47 4.0 21.5 1.0
C A:ASN46 4.0 14.9 1.0
C9 A:D2L204 4.1 26.9 0.8
C10 A:D2L204 4.2 28.8 0.8
CA A:ASN46 4.4 14.0 1.0
CG2 A:THR47 4.7 20.8 1.0
CG A:ASN46 4.8 15.4 1.0
O A:ASN46 4.8 15.1 1.0
O A:HOH419 4.8 19.2 1.0
C A:ASP48 4.9 17.1 1.0
O2 A:D2L204 4.9 25.1 0.8
OG A:SER50 4.9 11.8 1.0
O A:THR47 4.9 19.6 1.0
C11 A:D2L204 5.0 36.9 0.8

Reference:

B.Kanal Elamparithi, T.Ankur, M.Sivakumar, K.Gunasekaran. Crystal Structure of Lysozyme Complexed with A Bioactive Compound From Jatropha Gossypiifolia To Be Published.
Page generated: Tue Dec 15 12:26:26 2020

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