Sodium in PDB 6k2o: Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus

The structure of Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus, PDB code: 6k2o was solved by Z.Duan, X.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.71 / 2.30
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	80.454, 80.454, 116.593, 90.00, 90.00, 120.00
R / Rfree (%)	20.4 / 23.3

The binding sites of Sodium atom in the Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus (pdb code 6k2o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus, PDB code: 6k2o:

Sodium binding site 1 out of 1 in the Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na205 b:24.7 occ:1.00 NH2 A:ARG92 3.6 28.5 1.0 NH2 A:ARG91 3.7 29.6 1.0 NE A:ARG91 3.7 29.2 1.0 O A:HOH370 3.9 38.6 1.0 O A:HOH369 4.1 41.7 1.0 CZ A:ARG91 4.2 25.7 1.0 NE A:ARG92 4.2 30.5 1.0 CZ A:ARG92 4.3 26.1 1.0 O A:SER124 4.7 26.2 1.0 CG A:ARG91 4.8 29.2 1.0 CD A:ARG91 4.9 28.2 1.0

X.Sun, L.Dang, D.Li, J.Qi, M.Wang, W.Chai, Q.Zhang, H.Wang, R.Bai, M.Tan, Z.Duan. Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus. Virol Sin 2019.
ISSN: ISSN 1995-820X
PubMed: 31620994
DOI: 10.1007/S12250-019-00164-7