Sodium in PDB 6jzh: Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure

The structure of Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure, PDB code: 6jzh was solved by E.Nango, T.Shimamura, T.Nakane, Y.Yamanaka, C.Mori, K.T.Kimura, T.Fujiwara, T.Tanaka, S.Iwata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.36 / 2.25
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	40.170, 179.590, 142.080, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 21.8

The binding sites of Sodium atom in the Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure (pdb code 6jzh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure, PDB code: 6jzh:

Sodium binding site 1 out of 1 in the Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human A2A Adenosine Receptor in Complex with ZM241385 Obtained From Sfx Experiments Under Atmospheric Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2001 b:41.6 occ:1.00 OD1 A:ASP52 2.4 35.2 1.0 O A:HOH2138 2.4 39.1 1.0 O A:HOH2150 2.5 41.9 1.0 OG A:SER91 2.6 35.6 1.0 O A:HOH2118 2.7 35.4 1.0 HB3 A:SER91 3.2 39.6 1.0 CG A:ASP52 3.3 34.1 1.0 HD11 A:LEU48 3.4 43.0 1.0 HD12 A:LEU48 3.4 43.0 1.0 CB A:SER91 3.4 32.9 1.0 HD22 A:ASN280 3.5 39.4 1.0 HG A:SER281 3.6 45.9 1.0 OD2 A:ASP52 3.6 36.2 1.0 HB2 A:SER91 3.8 39.6 1.0 CD1 A:LEU48 3.8 35.8 1.0 HE2 A:PHE242 3.9 41.4 1.0 HD21 A:ASN280 4.0 39.4 1.0 ND2 A:ASN280 4.0 32.7 1.0 HB3 A:ALA51 4.1 43.0 1.0 HD13 A:LEU48 4.3 43.0 1.0 HA A:ASP52 4.3 40.6 1.0 HB1 A:ALA51 4.3 43.0 1.0 OG A:SER281 4.3 38.2 1.0 HD2 A:PHE242 4.4 42.6 1.0 HG21 A:VAL55 4.4 42.6 1.0 HA A:SER281 4.5 40.7 1.0 O A:HOH2120 4.5 35.7 1.0 HA A:THR88 4.6 35.1 1.0 CB A:ASP52 4.6 29.0 1.0 CE2 A:PHE242 4.7 34.5 1.0 CB A:ALA51 4.7 35.8 1.0 N A:ASP52 4.7 31.4 1.0 CA A:SER91 4.7 32.6 1.0 CA A:ASP52 4.8 33.7 1.0 O A:LEU48 4.8 34.1 1.0 HA A:SER91 4.8 39.3 1.0 HE1 A:TRP246 4.8 43.2 1.0 O A:LEU87 4.8 34.2 1.0 H A:ASP52 4.8 37.7 1.0 CD2 A:PHE242 4.9 35.4 1.0 HG A:LEU48 5.0 47.3 1.0

Y.Shimazu, K.Tono, T.Tanaka, Y.Yamanaka, T.Nakane, C.Mori, K.T.Kimura, T.Fujiwara, M.Sugahara, R.Tanaka, R.B.Doak, T.Shimamura, S.Iwata, E.Nango, M.Yabashi. High-Viscosity Sample-Injection Device For Serial Femtosecond Crystallography at Atmospheric Pressure J.Appl.Crystallogr. V. 52 2019.
ISSN: ESSN 1600-5767
DOI: 10.1107/S1600576719012846