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Sodium in PDB 6jnh: Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution

Enzymatic activity of Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution:
2.7.7.3;

Protein crystallography data

The structure of Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution, PDB code: 6jnh was solved by N.Iqbal, A.Gupta, P.Sharm, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 125.12 / 2.00
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 216.710, 216.710, 216.710, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 21.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution (pdb code 6jnh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution, PDB code: 6jnh:

Sodium binding site 1 out of 1 in 6jnh

Go back to Sodium Binding Sites List in 6jnh
Sodium binding site 1 out of 1 in the Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferasefrom Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:65.5
occ:0.70
 O A:HOH355 2.2 57.7 1.0
OD2 A:ASP21 2.3 49.4 1.0
N A:SER122 2.6 51.1 1.0
OG A:SER122 3.0 70.9 1.0
CA A:PRO121 3.0 53.1 1.0
NH2 A:ARG25 3.2 53.9 1.0
C A:PRO121 3.3 42.1 1.0
CG A:ASP21 3.3 56.9 1.0
CB A:PRO121 3.5 51.7 1.0
CD2 A:TYR125 3.6 55.4 1.0
CA A:SER122 3.7 55.4 1.0
CB A:ASP21 3.8 44.1 1.0
CB A:SER122 3.8 56.3 1.0
CD1 A:LEU22 4.1 57.3 1.0
O A:SER122 4.2 51.6 1.0
CB A:TYR125 4.3 48.3 1.0
N A:PRO121 4.3 54.1 1.0
O A:HOH303 4.3 63.5 1.0
O A:THR120 4.4 48.0 1.0
CG A:TYR125 4.4 50.9 1.0
OD1 A:ASP21 4.4 50.2 1.0
CZ A:ARG25 4.4 54.6 1.0
CE2 A:TYR125 4.4 67.5 1.0
C A:SER122 4.5 58.4 1.0
O A:PRO121 4.5 50.8 1.0
O A:GLY18 4.7 39.4 1.0
CD A:ARG25 4.8 43.8 1.0
C A:THR120 4.8 52.4 1.0
N A:LEU22 4.9 39.3 1.0
C A:ASP21 4.9 36.8 1.0
CA A:ASP21 5.0 40.6 1.0
CG A:PRO121 5.0 56.2 1.0

Reference:

N.Iqbal, A.Gupta, P.Sharm, T.P.Singh. Crystal Structure of the Complex of Phosphopantetheine Adenylyltransferase From Acinetobacter Baumannii with Ascorbic Acid (Vitamin-C) at 2.0A Resolution To Be Published.
Page generated: Tue Oct 8 11:27:39 2024

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