Sodium in PDB 6jbu: High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain

The structure of High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain, PDB code: 6jbu was solved by H.Liu, Z.Li, F.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.40 / 1.85
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	121.135, 121.135, 83.413, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 23.4

The binding sites of Sodium atom in the High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain (pdb code 6jbu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain, PDB code: 6jbu:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:24.6 occ:1.00 OD2 A:ASP332 2.3 30.2 1.0 OD1 A:ASN380 2.3 26.5 1.0 O A:HOH768 2.4 29.8 1.0 O A:ALA381 2.4 25.2 1.0 O A:VAL435 2.5 23.9 1.0 O A:HOH787 2.5 24.7 1.0 CG A:ASP332 3.2 31.5 1.0 OD1 A:ASP332 3.4 34.2 1.0 CG A:ASN380 3.5 26.8 1.0 C A:VAL435 3.6 21.9 1.0 C A:ALA381 3.6 25.7 1.0 NA A:NA509 4.0 26.1 1.0 N A:ALA381 4.0 21.2 1.0 N A:VAL435 4.1 23.0 1.0 ND2 A:ASN380 4.2 22.6 1.0 OD1 A:ASP436 4.2 41.6 1.0 CA A:VAL435 4.3 21.9 1.0 O A:HOH726 4.4 29.3 1.0 OH A:TYR323 4.4 26.9 1.0 O A:HOH717 4.5 26.1 1.0 CA A:ALA381 4.5 24.9 1.0 CB A:VAL435 4.5 27.7 1.0 N A:PHE382 4.6 26.7 1.0 CA A:PHE382 4.6 24.4 1.0 N A:ASP436 4.6 24.2 1.0 CB A:ASP332 4.6 28.1 1.0 CB A:PHE382 4.7 21.9 1.0 CB A:ASN380 4.7 26.7 1.0 CG A:ASP436 4.8 37.3 1.0 CA A:ASP436 4.8 25.3 1.0 O A:LEU333 4.8 27.1 1.0 CE2 A:TYR323 4.9 28.9 1.0

Sodium binding site 2 out of 3 in the High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:36.4 occ:1.00 O A:HOH790 2.3 44.8 1.0 O A:HOH618 2.4 31.7 1.0 O A:GLU202 2.5 32.4 1.0 O A:HOH765 2.5 54.5 1.0 O A:ASP199 2.5 46.0 1.0 O A:HOH712 2.7 38.9 1.0 C A:GLU202 3.6 37.4 1.0 C A:ASP199 3.6 43.7 1.0 CB A:GLU202 4.0 50.9 1.0 N A:GLU202 4.1 35.3 1.0 CA A:GLU202 4.1 39.6 1.0 O A:HOH813 4.1 64.3 1.0 ND2 A:ASN442 4.1 28.8 1.0 O A:PRO439 4.2 27.0 1.0 N A:ASP199 4.2 51.1 1.0 CA A:ASP199 4.3 44.5 1.0 OD1 A:ASN442 4.3 30.0 1.0 CG A:GLU202 4.4 64.5 1.0 CB A:ASP199 4.5 42.0 1.0 OE2 A:GLU202 4.5 71.4 1.0 CD A:PRO204 4.5 30.7 1.0 N A:PRO200 4.6 39.6 1.0 N A:PRO204 4.6 31.1 1.0 OE2 A:GLU337 4.7 30.3 1.0 CG A:ASN442 4.7 30.9 1.0 N A:GLY198 4.7 55.6 1.0 N A:CYS203 4.7 37.3 1.0 CA A:PRO200 4.7 35.7 1.0 C A:CYS203 4.8 32.9 1.0 CB A:PRO204 4.9 35.5 1.0 CG A:GLU337 4.9 25.9 1.0 CD A:GLU202 4.9 72.4 1.0 C A:PRO200 4.9 34.7 1.0

Sodium binding site 3 out of 3 in the High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na509 b:26.1 occ:1.00 OD1 A:ASP436 2.4 41.6 1.0 O A:HOH611 2.5 31.0 1.0 O A:LEU333 2.5 27.1 1.0 OD1 A:ASP332 2.5 34.2 1.0 O A:GLY278 3.0 25.3 1.0 O A:HOH768 3.1 29.8 1.0 CG A:ASP436 3.4 37.3 1.0 C A:GLY278 3.4 23.8 1.0 O A:HOH787 3.5 24.7 1.0 O A:PHE279 3.5 25.0 1.0 C A:LEU333 3.6 22.7 1.0 OD2 A:ASP436 3.6 39.0 1.0 CA A:GLY278 3.7 24.2 1.0 CG A:ASP332 3.7 31.5 1.0 CG1 A:VAL280 3.9 24.3 1.0 N A:LEU333 3.9 23.0 1.0 NA A:NA503 4.0 24.6 1.0 OD2 A:ASP332 4.2 30.2 1.0 N A:PHE279 4.2 21.9 1.0 C A:PHE279 4.3 25.9 1.0 CA A:LEU333 4.3 23.4 1.0 O A:HOH699 4.3 45.5 1.0 O A:THR277 4.3 25.0 1.0 C A:ASP332 4.6 26.7 1.0 N A:ALA334 4.7 22.3 1.0 CB A:ASP436 4.7 26.9 1.0 CB A:LEU333 4.8 25.9 1.0 CA A:ASP332 4.8 19.8 1.0 N A:GLY278 4.8 26.2 1.0 CB A:ASP332 4.9 28.1 1.0 CA A:PHE279 4.9 23.8 1.0 CA A:ALA334 4.9 22.7 1.0 O A:VAL435 4.9 23.9 1.0 O A:HOH726 4.9 29.3 1.0 O A:HOH717 5.0 26.1 1.0

H.Liu, Z.Li, F.Xu. High Resolution Crystal Structure of Human FLRT3 Lrr Domain in Complex with Mouse CIRL3 Olfactomedin Like Domain To Be Published.