Sodium in PDB 6hip: Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm

The structure of Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm, PDB code: 6hip was solved by M.Pabis, L.Corsini, M.Sattler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.49 / 1.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.210, 63.680, 67.630, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 17.5

The binding sites of Sodium atom in the Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm (pdb code 6hip). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm, PDB code: 6hip:

Sodium binding site 1 out of 1 in the Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of SPF45 Uhm Bound to Hiv-1 Rev Ulm within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:18.7 occ:1.00 NH2 C:ARG43 2.2 12.9 0.5 O A:HOH523 2.4 20.9 1.0 CZ C:ARG43 2.6 13.2 0.5 OE2 A:GLU325 2.6 4.5 1.0 OE1 A:GLU329 2.7 14.2 0.5 O C:HOH211 2.8 27.9 1.0 NE C:ARG43 2.9 10.9 0.5 NH1 C:ARG43 3.1 3.6 0.5 NH1 C:ARG43 3.4 15.2 0.5 CD A:GLU325 3.5 3.7 1.0 CD C:ARG43 3.5 5.2 0.5 CG A:GLU325 3.5 3.7 1.0 CD A:GLU329 3.7 10.0 0.5 CG A:GLU329 3.9 8.3 0.5 CD C:ARG43 4.0 7.7 0.5 CG C:ARG43 4.0 5.4 0.5 CB C:ARG43 4.1 4.6 0.5 OE1 A:GLU329 4.1 9.5 0.5 CZ C:ARG43 4.1 3.0 0.5 NE C:ARG43 4.3 3.9 0.5 CB C:ARG43 4.4 4.1 0.5 O C:HOH201 4.4 29.1 1.0 CB C:TRP45 4.5 3.2 1.0 CG C:ARG43 4.6 5.0 0.5 OE1 A:GLU325 4.6 3.8 1.0 O C:TRP45 4.7 5.5 1.0 OE2 A:GLU329 4.8 10.6 0.5 N C:TRP45 4.9 2.6 1.0 OE2 A:GLU328 4.9 17.9 1.0 CA C:ARG43 5.0 3.4 0.5 CB A:GLU325 5.0 3.5 1.0

M.Pabis, L.Corsini, M.Vincendeau, K.Tripsianes, T.J.Gibson, R.Brack-Werner, M.Sattler. Modulation of Hiv-1 Gene Expression By Binding of A Ulm Motif in the Rev Protein to Uhm-Containing Splicing Factors. Nucleic Acids Res. V. 47 4859 2019.
ISSN: ESSN 1362-4962
PubMed: 30892606
DOI: 10.1093/NAR/GKZ185